Non-Coding RNA Search

Ss1.1-Pig1-50P05.5

Sequence:


               
               GCGGGCGGGCGGTGAGCGCCCATATGGGGGTTCTGGAGAGTGGGGTGTGGGCCCTCCCAG
GCCCAATACTTCAAAGCATCTTACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGG
AAACTGCCCTCAAGAAAGGCCTCTCTACTCAGGCCATTTGGCGCCGACTATGGGATGAGC
TGATGAAGACAAGGCCTTCCAGTCTGGAAAGTGTGACCTGTTGGCGAGCCAAGTTTATGG
AGGCCTTTTTTTCCCATGTTCTACGTGGGACCATTGATGTGTCTTCCGACAGGCGTCTTT
GTGATCAGCGCTTCTCGCCTCTCCTGCATAGCTCCCGCCACGTCCGGCAGCTCACCATCT
GCAACATGCTGCAGGGGGCAACTGAGCTGGTGGCAGAGCCCAACCGCAGGGTTCTGGAGA
CCCTGGCCAGCTCCCTGCACACCCTCAAGTTCCGACACCTGCTCTTTTCTGATGTGGCTG
CTCAGCAGTCACTTCGGCAGCTGTTACACCAGCTTATTCACCATGGGGCCGTCAGCCAGG
TGTCGCTGTACTCCTGGCCTGTGCCTGAGTCAGCCCTTTTCATTCTCATCCTCACCATGA
AGTGCTGGCTTCTGGCAGCCAGGCCCCGGGGGCCCCCCCTGCCGCCTCTGTGGAGAGGCC
TCCCGAGGCCGGGCCCCATCCCGAGATGAAGGGTCTCTCTTGCTGGGCTCACGCCGGCCT
CGCCGGGATGCTGCTGAGCGATGTGCTGCAGCGCTGATGGCCTCGCGGCGGAAGAGCGAA
GCCAAGCAGTCGGCCAGAGCCACACCCGCCACTCGTGTAACACGCCGGAGCACACAGGAG
AGCCTGACAACAGGCGGGACAGACCCTAAGAGGGAGCTGCTCCCTCCAGCCACCTCCCAT
GAGGCTCCTGGCCCCAAACGCCCACCCTCTGCTCCAGCCACCACCTCCTTTGCCTCTGCC
TCTTCCTCCACATCATCTAAACGGGCTCCAGCTAGCTCAGCCCCACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGCGGGCGGTGAGCGCCCATATGGGGGTTCTGGAGAGTGGGGTGTGGGCCCTCCCAG
GCCCAATACTTCAAAGCATCTTACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGG
AAACTGCCCTCAAGAAAGGCCTCTCTACTCAGGCCATTTGGCGCCGACTATGGGATGAGC
TGATGAAGACAAGGCCTTCCAGTCTGGAAAGTGTGACCTGTTGGCGAGCCAAGTTTATGG
AGGCCTTTTTTTCCCATGTTCTACGTGGGACCATTGATGTGTCTTCCGACAGGCGTCTTT
GTGATCAGCGCTTCTCGCCTCTCCTGCATAGCTCCCGCCACGTCCGGCAGCTCACCATCT
GCAACATGCTGCAGGGGGCAACTGAGCTGGTGGCAGAGCCCAACCGCAGGGTTCTGGAGA
CCCTGGCCAGCTCCCTGCACACCCTCAAGTTCCGACACCTGCTCTTTTCTGATGTGGCTG
CTCAGCAGTCACTTCGGCAGCTGTTACACCAGCTTATTCACCATGGGGCCGTCAGCCAGG
TGTCGCTGTACTCCTGGCCTGTGCCTGAGTCAGCCCTTTTCATTCTCATCCTCACCATGA
AGTGCTGGCTTCTGGCAGCCAGGCCCCGGGGGCCCCCCCTGCCGCCTCTGTGGAGAGGCC
TCCCGAGGCCGGGCCCCATCCCGAGATGAAGGGTCTCTCTTGCTGGGCTCACGCCGGCCT
CGCCGGGATGCTGCTGAGCGATGTGCTGCAGCGCTGATGGCCTCGCGGCGGAAGAGCGAA
GCCAAGCAGTCGGCCAGAGCCACACCCGCCACTCGTGTAACACGCCGGAGCACACAGGAG
AGCCTGACAACAGGCGGGACAGACCCTAAGAGGGAGCTGCTCCCTCCAGCCACCTCCCAT
GAGGCTCCTGGCCCCAAACGCCCACCCTCTGCTCCAGCCACCACCTCCTTTGCCTCTGCC
TCTTCCTCCACATCATCTAAACGGGCTCCAGCTAGCTCAGCCCCACAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q862I4_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q862I4_BOVIN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               329-448, - strand, RNAz p=0.966174
               

               
               529-768, - strand, RNAz p=0.991282
               

               
               809-968, - strand, RNAz p=0.998841

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               329-448, - strand, RNAz p=0.966174
               

               
               529-768, - strand, RNAz p=0.991282
               

               
               809-968, - strand, RNAz p=0.998841

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               210-1008, gnl|bosTau2|chr3 (67572918-67572118)
               

               
               210-1008, gnl|Hg17|chr1 (46464191-46463397)
               

               
               210-1008, gnl|Mm7|chr4 (115464886-115465665)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               210-1008, gnl|bosTau2|chr3 (67572918-67572118)
               

               
               210-1008, gnl|Hg17|chr1 (46464191-46463397)
               

               
               210-1008, gnl|Mm7|chr4 (115464886-115465665)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	329-448, - strand, RNAz p=0.966174
	529-768, - strand, RNAz p=0.991282
	809-968, - strand, RNAz p=0.998841

	210-1008, gnl\|bosTau2\|chr3 (67572918-67572118)
	210-1008, gnl\|Hg17\|chr1 (46464191-46463397)
	210-1008, gnl\|Mm7\|chr4 (115464886-115465665)