Non-Coding RNA Search

Ss1.1-Pig1-51E08.5

Sequence:


               
               ATGGGCCACGTTTCATGTCTTTGTTAAGAACTCGAGATAGAGCCACAATTTTGATTTTCG
CTTCCAACCCCCCGCCCCCCAGCACACCCTTCTCTTTCCTTTGGCTCCTCTTCATCCGTG
GATATTCTTCATCCGAGAAGAATATCTGTTTGAAATGGGGAAAAAATGTAAAGGTAAAAA
GTCACGAGGCGCCAAGGGTGATCGCAAGTGACCGGAAGTAATCACACCTTTTAAGAAAAA
CTCATGTGCTTTTCTTCGTAGTGGCAAACAACGAGATGGTACAACCTCTATCCCTTTCCG
AAAGCAAAACAGAGGGCACAGCATCTGTAGTCAGCCGACAGCTGGCTGGGCCTTTGGGGG
TGGTCTCATCGTACTTGTGATTTCAGTGGTACGTGGCCCCCGCCGAAGGCTGGCCCCCAC
CCCCCCACCCCGTTCGGCCGTGTACATAGCGCACTGTTCCTGCGGGCGGGCCCGGCACTT
TCCGTCAATGTTGTACTGTACGTGATGCATTGCGTTGGTCTCTGCATTTTTCTGCAGAAG
AGGAGTAACCGCTCCGGGTACCTTGACCTTTGTGTAGCCCAGAGGCCAACACTGTGGGCG
TGTGACTCTTTAGCAACAAAACCCATGTGGTGATGACGTGTGTGTATATATAAGGATATA
TGGGGAAGATTTCTAAATAAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGCCACGTTTCATGTCTTTGTTAAGAACTCGAGATAGAGCCACAATTTTGATTTTCG
CTTCCAACCCCCCGCCCCCCAGCACACCCTTCTCTTTCCTTTGGCTCCTCTTCATCCGTG
GATATTCTTCATCCGAGAAGAATATCTGTTTGAAATGGGGAAAAAATGTAAAGGTAAAAA
GTCACGAGGCGCCAAGGGTGATCGCAAGTGACCGGAAGTAATCACACCTTTTAAGAAAAA
CTCATGTGCTTTTCTTCGTAGTGGCAAACAACGAGATGGTACAACCTCTATCCCTTTCCG
AAAGCAAAACAGAGGGCACAGCATCTGTAGTCAGCCGACAGCTGGCTGGGCCTTTGGGGG
TGGTCTCATCGTACTTGTGATTTCAGTGGTACGTGGCCCCCGCCGAAGGCTGGCCCCCAC
CCCCCCACCCCGTTCGGCCGTGTACATAGCGCACTGTTCCTGCGGGCGGGCCCGGCACTT
TCCGTCAATGTTGTACTGTACGTGATGCATTGCGTTGGTCTCTGCATTTTTCTGCAGAAG
AGGAGTAACCGCTCCGGGTACCTTGACCTTTGTGTAGCCCAGAGGCCAACACTGTGGGCG
TGTGACTCTTTAGCAACAAAACCCATGTGGTGATGACGTGTGTGTATATATAAGGATATA
TGGGGAAGATTTCTAAATAAAAGT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               120-224, - strand, RNAz p=0.612612
               

               
               305-420, - strand, RNAz p=0.631116
               

               
               501-611, + strand, RNAz p=0.581573

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-224, - strand, RNAz p=0.612612
               

               
               305-420, - strand, RNAz p=0.631116
               

               
               501-611, + strand, RNAz p=0.581573

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of M61108, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of M61108, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-684, gnl|bosTau2|chr27 (16669196-16668547)
               

               
               1-684, gnl|Hg17|chr1 (47394665-47393995)
               

               
               1-684, gnl|Mm7|chr4 (114447506-114448183)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr27 (16669196-16668547)
               

               
               1-684, gnl|Hg17|chr1 (47394665-47393995)
               

               
               1-684, gnl|Mm7|chr4 (114447506-114448183)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eli (0.455443)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.455443)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pgl (0.118483)

	120-224, - strand, RNAz p=0.612612
	305-420, - strand, RNAz p=0.631116
	501-611, + strand, RNAz p=0.581573

	1-684, gnl\|bosTau2\|chr27 (16669196-16668547)
	1-684, gnl\|Hg17\|chr1 (47394665-47393995)
	1-684, gnl\|Mm7\|chr4 (114447506-114448183)