Non-Coding RNA Search

Ss1.1-Pig1-51E23.5

Sequence:


               
               GTGATTGGGCTGGAGGGGCCAAGGTGGACCGCTCTGGCAGAGGGCTAGCACTGGTCTGGA
GGAGACAGATTCAGCAGCTGAACCGAGTCAGCCTGGAAATGGCCAGTGCCGTTGTGGATG
CCTATCCCTCCCCGCAGCTCCTGATCCAGGCTTATAAGCGGTGCTTTTCCGAGCAAGAAC
GCCAGAATTTGCTCGCAGAGCATCCAAGTGCGCCGTGGGGAAGGCGTGACAGCCACCTCC
CGCCGTGTTGGGCCAGAGCTGTCTAGGCGGATCTACCTTCAGATGACAGCTTTGCAGCCA
GATCTCTCTTTAGACGGTACAGACTGATGCCAGCCCCCAGGGACAAGGATGAAAAGCTGG
ACTTCCACCGCCCCCACCTGGGAGCATGACTACAGTGCAGGGATTAGAAGCACCCCCGGC
AGCACAAGGCCAGCTCCTGCCCACAACAGGCTCTCTGAGCGTCACTATTTGTGATAGTTT
CCCTGTCAGTGTGGGATGGAGGCTGAGATGCTCGCATCTGCCTTCCTCCCTTAGCACGTC
GACTGCCACGTACAAACCGCCTCTACCCTGCCCCTACCAGCTCTCAAAACACGAAGGAAC
AAAGGCAAACCACTCAGACACGTATTTAATAATTGCAGAAATCCAAAAGAACCTCAACAT
CAAATCTCGAGGTCACGAGCGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGATTGGGCTGGAGGGGCCAAGGTGGACCGCTCTGGCAGAGGGCTAGCACTGGTCTGGA
GGAGACAGATTCAGCAGCTGAACCGAGTCAGCCTGGAAATGGCCAGTGCCGTTGTGGATG
CCTATCCCTCCCCGCAGCTCCTGATCCAGGCTTATAAGCGGTGCTTTTCCGAGCAAGAAC
GCCAGAATTTGCTCGCAGAGCATCCAAGTGCGCCGTGGGGAAGGCGTGACAGCCACCTCC
CGCCGTGTTGGGCCAGAGCTGTCTAGGCGGATCTACCTTCAGATGACAGCTTTGCAGCCA
GATCTCTCTTTAGACGGTACAGACTGATGCCAGCCCCCAGGGACAAGGATGAAAAGCTGG
ACTTCCACCGCCCCCACCTGGGAGCATGACTACAGTGCAGGGATTAGAAGCACCCCCGGC
AGCACAAGGCCAGCTCCTGCCCACAACAGGCTCTCTGAGCGTCACTATTTGTGATAGTTT
CCCTGTCAGTGTGGGATGGAGGCTGAGATGCTCGCATCTGCCTTCCTCCCTTAGCACGTC
GACTGCCACGTACAAACCGCCTCTACCCTGCCCCTACCAGCTCTCAAAACACGAAGGAAC
AAAGGCAAACCACTCAGACACGTATTTAATAATTGCAGAAATCCAAAAGAACCTCAACAT
CAAATCTCGAGGTCACGAGCGAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.71444

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.71444

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-150, gnl|bosTau2|chr19 (29013971-29013822)
               

               
               1-150, gnl|canFam2|chr9 (29673825-29674025)
               

               
               1-150, gnl|danRer3|chrUn (115117775-115117971)
               

               
               1-150, gnl|dasNov1|scaffold_107025 (2152-2348)
               

               
               1-150, gnl|echTel1|scaffold_301208 (20815-20615)
               

               
               1-150, gnl|fr1|chrUn (21949070-21948878)
               

               
               1-150, gnl|hg17|chr17 (45812668-45812868)
               

               
               1-150, gnl|Hg17|chr17 (45812713-45812862)
               

               
               1-150, gnl|loxAfr1|scaffold_89248 (541-741)
               

               
               1-150, gnl|mm7|chr11 (94755050-94754850)
               

               
               1-150, gnl|Mm7|chr11 (94755003-94754854)
               

               
               1-150, gnl|monDom2|scaffold_230 (109989-110189)
               

               
               1-150, gnl|oryCun1|scaffold_186320 (59206-59406)
               

               
               1-150, gnl|panTro1|chr19_random (31449606-31449806)
               

               
               1-150, gnl|rheMac2|chr16 (34626615-34626815)
               

               
               1-150, gnl|rn3|chr10 (83294063-83293863)
               

               
               1-150, gnl|tetNig1|chrUn_random (107949559-107949759)
               

               
               1-150, gnl|xenTro1|scaffold_485 (676530-676334)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-150, gnl|bosTau2|chr19 (29013971-29013822)
               

               
               1-150, gnl|canFam2|chr9 (29673825-29674025)
               

               
               1-150, gnl|danRer3|chrUn (115117775-115117971)
               

               
               1-150, gnl|dasNov1|scaffold_107025 (2152-2348)
               

               
               1-150, gnl|echTel1|scaffold_301208 (20815-20615)
               

               
               1-150, gnl|fr1|chrUn (21949070-21948878)
               

               
               1-150, gnl|hg17|chr17 (45812668-45812868)
               

               
               1-150, gnl|Hg17|chr17 (45812713-45812862)
               

               
               1-150, gnl|loxAfr1|scaffold_89248 (541-741)
               

               
               1-150, gnl|mm7|chr11 (94755050-94754850)
               

               
               1-150, gnl|Mm7|chr11 (94755003-94754854)
               

               
               1-150, gnl|monDom2|scaffold_230 (109989-110189)
               

               
               1-150, gnl|oryCun1|scaffold_186320 (59206-59406)
               

               
               1-150, gnl|panTro1|chr19_random (31449606-31449806)
               

               
               1-150, gnl|rheMac2|chr16 (34626615-34626815)
               

               
               1-150, gnl|rn3|chr10 (83294063-83293863)
               

               
               1-150, gnl|tetNig1|chrUn_random (107949559-107949759)
               

               
               1-150, gnl|xenTro1|scaffold_485 (676530-676334)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	1-150, gnl\|bosTau2\|chr19 (29013971-29013822)
	1-150, gnl\|canFam2\|chr9 (29673825-29674025)
	1-150, gnl\|danRer3\|chrUn (115117775-115117971)
	1-150, gnl\|dasNov1\|scaffold_107025 (2152-2348)
	1-150, gnl\|echTel1\|scaffold_301208 (20815-20615)
	1-150, gnl\|fr1\|chrUn (21949070-21948878)
	1-150, gnl\|hg17\|chr17 (45812668-45812868)
	1-150, gnl\|Hg17\|chr17 (45812713-45812862)
	1-150, gnl\|loxAfr1\|scaffold_89248 (541-741)
	1-150, gnl\|mm7\|chr11 (94755050-94754850)
	1-150, gnl\|Mm7\|chr11 (94755003-94754854)
	1-150, gnl\|monDom2\|scaffold_230 (109989-110189)
	1-150, gnl\|oryCun1\|scaffold_186320 (59206-59406)
	1-150, gnl\|panTro1\|chr19_random (31449606-31449806)
	1-150, gnl\|rheMac2\|chr16 (34626615-34626815)
	1-150, gnl\|rn3\|chr10 (83294063-83293863)
	1-150, gnl\|tetNig1\|chrUn_random (107949559-107949759)
	1-150, gnl\|xenTro1\|scaffold_485 (676530-676334)