Non-Coding RNA Search

Ss1.1-Pig1-51H04.5

Sequence:


               
               CATGAGGCTCCCGCCCTATGGCCTGTGTGAGCGTGGAGACCCCGACTCCTCCCCTGCGGG
GCCACGAGAGGCTTCTCCCCTGGTTGTCATCAGCCAGCCAGCTCCCATTGCTCCCCACCT
CTCAGGGCCAGCCGAGGACAGTAGCTCTGACTCGGAGGCTGAAGATGAGAAATCAGTCTT
GATGGCAGCTGTGCAGAGTGGCGGTGAGGAGGCCAACCTGCTACTTCCGGAACTGGGCAG
TGCCTTCTATGACATGGCCAGTGGCTTTGCGGTGGGTCCCTTGTCAGAGGCCGGCCCTGG
GGGCCCTGCCACCCCCCCATGGAAGGAGTGCCCCATTTGTAAGGAGCGCTTCCCAGCTGA
GAGCGAGAAGGATGGCCTGGAGCACCACATGGACGGACACTTCTTCTTCAGCACCCAGGA
CCCCTTCACCTTCGAGTGATCCCCCTCCCCAGTACATGCACAAGTACACACTTACACACA
CATGCACACACTCATGCATCGCCCTACGCTTAGGTGTCACGCCTCTCTTCCCACATGCTC
AGCTCCATGATATTCTGTTGCCAGAGAACCGCTCGTGTGTGGTTTCATCCAAGCTCTCCA
GCTTCACCCTCTCCTTCCTGGCTCTTCTGTCCAGGCAGCGACTCCTTCTTGGAAGCAGTG
GCTGAGTTCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGAGGCTCCCGCCCTATGGCCTGTGTGAGCGTGGAGACCCCGACTCCTCCCCTGCGGG
GCCACGAGAGGCTTCTCCCCTGGTTGTCATCAGCCAGCCAGCTCCCATTGCTCCCCACCT
CTCAGGGCCAGCCGAGGACAGTAGCTCTGACTCGGAGGCTGAAGATGAGAAATCAGTCTT
GATGGCAGCTGTGCAGAGTGGCGGTGAGGAGGCCAACCTGCTACTTCCGGAACTGGGCAG
TGCCTTCTATGACATGGCCAGTGGCTTTGCGGTGGGTCCCTTGTCAGAGGCCGGCCCTGG
GGGCCCTGCCACCCCCCCATGGAAGGAGTGCCCCATTTGTAAGGAGCGCTTCCCAGCTGA
GAGCGAGAAGGATGGCCTGGAGCACCACATGGACGGACACTTCTTCTTCAGCACCCAGGA
CCCCTTCACCTTCGAGTGATCCCCCTCCCCAGTACATGCACAAGTACACACTTACACACA
CATGCACACACTCATGCATCGCCCTACGCTTAGGTGTCACGCCTCTCTTCCCACATGCTC
AGCTCCATGATATTCTGTTGCCAGAGAACCGCTCGTGTGTGGTTTCATCCAAGCTCTCCA
GCTTCACCCTCTCCTTCCTGGCTCTTCTGTCCAGGCAGCGACTCCTTCTTGGAAGCAGTG
GCTGAGTTCACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31874672|emb|CAD98068.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31874672|emb|CAD98068.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               260-378, - strand, RNAz p=0.661178

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               260-378, - strand, RNAz p=0.661178

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-170, gnl|bosTau2|chr5 (25281354-25281526)
               

               
               1-170, gnl|Hg17|chr12 (52393905-52393737)
               

               
               1-170, gnl|Mm7|chr15 (102695386-102695217)
               


               
               260-671, gnl|bosTau2|chr5 (25283139-25283538)
               

               
               260-671, gnl|canFam2|chr27 (4543078-4542460)
               

               
               260-671, gnl|hg17|chr12 (52391578-52392175)
               

               
               260-671, gnl|Hg17|chr12 (52392174-52391761)
               

               
               260-671, gnl|mm7|chr15 (102693132-102693706)
               

               
               260-671, gnl|Mm7|chr15 (102693705-102693288)
               

               
               260-671, gnl|oryCun1|scaffold_86553 (3435-4020)
               

               
               260-671, gnl|rheMac2|chr11 (50799043-50799644)
               

               
               260-671, gnl|rn3|chr7 (141533087-141533649)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-170, gnl|bosTau2|chr5 (25281354-25281526)
               

               
               1-170, gnl|Hg17|chr12 (52393905-52393737)
               

               
               1-170, gnl|Mm7|chr15 (102695386-102695217)
               


               
               260-671, gnl|bosTau2|chr5 (25283139-25283538)
               

               
               260-671, gnl|canFam2|chr27 (4543078-4542460)
               

               
               260-671, gnl|hg17|chr12 (52391578-52392175)
               

               
               260-671, gnl|Hg17|chr12 (52392174-52391761)
               

               
               260-671, gnl|mm7|chr15 (102693132-102693706)
               

               
               260-671, gnl|Mm7|chr15 (102693705-102693288)
               

               
               260-671, gnl|oryCun1|scaffold_86553 (3435-4020)
               

               
               260-671, gnl|rheMac2|chr11 (50799043-50799644)
               

               
               260-671, gnl|rn3|chr7 (141533087-141533649)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               eru (0.120048)

	1-170, gnl\|bosTau2\|chr5 (25281354-25281526)
	1-170, gnl\|Hg17\|chr12 (52393905-52393737)
	1-170, gnl\|Mm7\|chr15 (102695386-102695217)

	260-671, gnl\|bosTau2\|chr5 (25283139-25283538)
	260-671, gnl\|canFam2\|chr27 (4543078-4542460)
	260-671, gnl\|hg17\|chr12 (52391578-52392175)
	260-671, gnl\|Hg17\|chr12 (52392174-52391761)
	260-671, gnl\|mm7\|chr15 (102693132-102693706)
	260-671, gnl\|Mm7\|chr15 (102693705-102693288)
	260-671, gnl\|oryCun1\|scaffold_86553 (3435-4020)
	260-671, gnl\|rheMac2\|chr11 (50799043-50799644)
	260-671, gnl\|rn3\|chr7 (141533087-141533649)