Ss1.1-Pig1-51H17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACCGAGGCCGAGGTGGAGAACTGGGGGGCAGGTCCTCCCTCCCACTACGGGGAACACCG CTCCCCGCAGCCCTGAGCCCCAGGAGAATGGCTCTGGAGGAGGGCGGGAGACTGTCCGAG GTGCGGGCACGAGTTGGGGCTTCGCATGGCATCACCGATCTGACCTGCAAGCTTCACTTT TATGACCAGTGGGCCCAGGACTATGACCAGGATGTGGCCATGCTGCAGTACCGTGCCCCC CGCCTCGCAGTGGATTGCCTCACCCGTGCCCTGCCGGGCCCACCCCATGACGCCCTGATC TTGGATGTGGCCTGTGGCACTGGCCTGGTGGCTGTAGAGCTGCAGGCTCGGGGCTTCCTC CAGCTGCATGGAGTGGATGGGAGCCCGGGGATGCTGGAACAGGCCCGGGCCCGTGGCCTC TACCGGCGCCTCAGCCTATGTACGCTGGGTCAGGAGCCTCTGCCCAGCTCTGAAGGGACC TTTGATGCGGTACTGATGGTGGGTGCCCTCAGTGATGGCCAGGTGCCCTGCAGTGCCATA CCTGAGCTCCTGAGAGTTGCCAAGCCAGGTGGGCTGGTATGTCTGACCACCAGGACGAAC CCATCCAACCTTCGGTACAAAGAAGAACTGGAGGCTACCCTGGACAGGTTGGAGCAAGCT GGGGCGTGGGAACGCCTGATGGCCTGGCCTGTGGAGCAGTGGGAGCTGGCCACCTCCAAG CTTGAGGTGGGACCTGGCACTTCTGACAGCGATGGCTTCATCTCCGGGATCGTCTACCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACCGAGGCCGAGGTGGAGAACTGGGGGGCAGGTCCTCCCTCCCACTACGGGGAACACCG CTCCCCGCAGCCCTGAGCCCCAGGAGAATGGCTCTGGAGGAGGGCGGGAGACTGTCCGAG GTGCGGGCACGAGTTGGGGCTTCGCATGGCATCACCGATCTGACCTGCAAGCTTCACTTT TATGACCAGTGGGCCCAGGACTATGACCAGGATGTGGCCATGCTGCAGTACCGTGCCCCC CGCCTCGCAGTGGATTGCCTCACCCGTGCCCTGCCGGGCCCACCCCATGACGCCCTGATC TTGGATGTGGCCTGTGGCACTGGCCTGGTGGCTGTAGAGCTGCAGGCTCGGGGCTTCCTC CAGCTGCATGGAGTGGATGGGAGCCCGGGGATGCTGGAACAGGCCCGGGCCCGTGGCCTC TACCGGCGCCTCAGCCTATGTACGCTGGGTCAGGAGCCTCTGCCCAGCTCTGAAGGGACC TTTGATGCGGTACTGATGGTGGGTGCCCTCAGTGATGGCCAGGTGCCCTGCAGTGCCATA CCTGAGCTCCTGAGAGTTGCCAAGCCAGGTGGGCTGGTATGTCTGACCACCAGGACGAAC CCATCCAACCTTCGGTACAAAGAAGAACTGGAGGCTACCCTGGACAGGTTGGAGCAAGCT GGGGCGTGGGAACGCCTGATGGCCTGGCCTGTGGAGCAGTGGGAGCTGGCCACCTCCAAG CTTGAGGTGGGACCTGGCACTTCTGACAGCGATGGCTTCATCTCCGGGATCGTCTACCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 604-752, + strand, RNAz p=0.97533 | |
| 672-780, + strand, RNAz p=0.640225 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 604-752, + strand, RNAz p=0.97533 | |
| 672-780, + strand, RNAz p=0.640225 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 95-222, gnl|bosTau2|chr25 (30063613-30063484) | |
| 95-222, gnl|canFam2|chr6 (9490017-9489642) | |
| 95-222, gnl|hg17|chr7 (72700762-72701065) | |
| 95-222, gnl|Hg17|chr7 (72701120-72700994) | |
| 95-222, gnl|mm7|chr5 (133904371-133904063) | |
| 95-222, gnl|Mm7|chr5 (133904006-133904142) | |
| 95-222, gnl|panTro1|chr6 (74436854-74437157) | |
| 95-222, gnl|rheMac2|chr3 (51378048-51378339) | |
| 95-222, gnl|rn3|chr12 (22701246-22701576) | |
| 338-479, gnl|bosTau2|chr25 (30062636-30062495) | |
| 338-479, gnl|Hg17|chr7 (72699532-72699391) | |
| 338-479, gnl|Mm7|chr5 (133905567-133905708) | |
| 565-780, gnl|bosTau2|chr25 (30060016-30059801) | |
| 565-780, gnl|canFam2|chr6 (9492960-9492716) | |
| 565-780, gnl|echTel1|scaffold_163013 (3125-2879) | |
| 565-780, gnl|hg17|chr7 (72693755-72694011) | |
| 565-780, gnl|Hg17|chr7 (72693987-72693761) | |
| 565-780, gnl|mm7|chr5 (133911956-133911709) | |
| 565-780, gnl|Mm7|chr5 (133911733-133911948) | |
| 565-780, gnl|monDom2|scaffold_77 (6326258-6326503) | |
| 565-780, gnl|oryCun1|scaffold_128452 (3014-3248) | |
| 565-780, gnl|panTro1|chr6 (74432266-74432511) | |
| 565-780, gnl|rn3|chr12 (22693200-22693448) | |
| 565-780, gnl|tetNig1|chr7 (7334470-7334675) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 95-222, gnl|bosTau2|chr25 (30063613-30063484) | |
| 95-222, gnl|canFam2|chr6 (9490017-9489642) | |
| 95-222, gnl|hg17|chr7 (72700762-72701065) | |
| 95-222, gnl|Hg17|chr7 (72701120-72700994) | |
| 95-222, gnl|mm7|chr5 (133904371-133904063) | |
| 95-222, gnl|Mm7|chr5 (133904006-133904142) | |
| 95-222, gnl|panTro1|chr6 (74436854-74437157) | |
| 95-222, gnl|rheMac2|chr3 (51378048-51378339) | |
| 95-222, gnl|rn3|chr12 (22701246-22701576) | |
| 338-479, gnl|bosTau2|chr25 (30062636-30062495) | |
| 338-479, gnl|Hg17|chr7 (72699532-72699391) | |
| 338-479, gnl|Mm7|chr5 (133905567-133905708) | |
| 565-780, gnl|bosTau2|chr25 (30060016-30059801) | |
| 565-780, gnl|canFam2|chr6 (9492960-9492716) | |
| 565-780, gnl|echTel1|scaffold_163013 (3125-2879) | |
| 565-780, gnl|hg17|chr7 (72693755-72694011) | |
| 565-780, gnl|Hg17|chr7 (72693987-72693761) | |
| 565-780, gnl|mm7|chr5 (133911956-133911709) | |
| 565-780, gnl|Mm7|chr5 (133911733-133911948) | |
| 565-780, gnl|monDom2|scaffold_77 (6326258-6326503) | |
| 565-780, gnl|oryCun1|scaffold_128452 (3014-3248) | |
| 565-780, gnl|panTro1|chr6 (74432266-74432511) | |
| 565-780, gnl|rn3|chr12 (22693200-22693448) | |
| 565-780, gnl|tetNig1|chr7 (7334470-7334675) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| eru (0.120048) |