Non-Coding RNA Search

Ss1.1-Pig1-51O18.5

Sequence:


               
               GTTCAGAAGCTCCTCCAGAAGTGCCCGGAGAAGCGCCTGGGGGCAGGCGAGCGAGACGCC
GAGGAGATCAAGACACAGCCTTTCTTCAGGACCACCGACTGGCAGGCCCTGCTCGCCCGT
GCCGTCCAGCCCCCCTTCGTGCCCACGCTCTGCAGCCCCACAGACCTGCGCTACTTCGAG
GGCGAGTTCACGGGGCTGCCGCCTGCGCTGACCCCGCCTGACCCCCGCAGCCCCCTCACC
GCCCGCCAACAGGCCGCCTTCCAGGACTTTGACTTCGTGTCCGAGCGATTCCTGGAGCCC
TGAAGACCTCCCAGCATCACCACTCGCTGCCCCCAGGCTGTTAGAATTCCCACTGGCCCA
CCGGTCTGCCCGTCTGGGCGCCCTGCCCTGTAGGCCCAGCCTGGCCTGGTGTTGATGTGC
CCTTGGGACTCGAGGTGGCAGGCACAGGGCTACCGTCGTGGGCTGCGCTCAGTCACTGGG
CAAAGTGCTGCCCTCCGCCCCCCTCCCGCTGACCCCTCCTGTGTCCCCCTGGACCAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCAGAAGCTCCTCCAGAAGTGCCCGGAGAAGCGCCTGGGGGCAGGCGAGCGAGACGCC
GAGGAGATCAAGACACAGCCTTTCTTCAGGACCACCGACTGGCAGGCCCTGCTCGCCCGT
GCCGTCCAGCCCCCCTTCGTGCCCACGCTCTGCAGCCCCACAGACCTGCGCTACTTCGAG
GGCGAGTTCACGGGGCTGCCGCCTGCGCTGACCCCGCCTGACCCCCGCAGCCCCCTCACC
GCCCGCCAACAGGCCGCCTTCCAGGACTTTGACTTCGTGTCCGAGCGATTCCTGGAGCCC
TGAAGACCTCCCAGCATCACCACTCGCTGCCCCCAGGCTGTTAGAATTCCCACTGGCCCA
CCGGTCTGCCCGTCTGGGCGCCCTGCCCTGTAGGCCCAGCCTGGCCTGGTGTTGATGTGC
CCTTGGGACTCGAGGTGGCAGGCACAGGGCTACCGTCGTGGGCTGCGCTCAGTCACTGGG
CAAAGTGCTGCCCTCCGCCCCCCTCCCGCTGACCCCTCCTGTGTCCCCCTGGACCAGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61831670|ref|XP_610990.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61831670|ref|XP_610990.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               233-350, - strand, RNAz p=0.771743

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               233-350, - strand, RNAz p=0.771743

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               78-507, gnl|bosTau2|chr11 (78515125-78515542)
               

               
               78-507, gnl|Hg17|chr9 (128562213-128562633)
               

               
               78-507, gnl|Mm7|chr2 (30097817-30098196)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-507, gnl|bosTau2|chr11 (78515125-78515542)
               

               
               78-507, gnl|Hg17|chr9 (128562213-128562633)
               

               
               78-507, gnl|Mm7|chr2 (30097817-30098196)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	78-507, gnl\|bosTau2\|chr11 (78515125-78515542)
	78-507, gnl\|Hg17\|chr9 (128562213-128562633)
	78-507, gnl\|Mm7\|chr2 (30097817-30098196)