Non-Coding RNA Search

Ss1.1-Pig1-52A14.5

Sequence:


               
               TTTTCTGATATGGACAGCTGCTTTTTTTCAGACTTAATTTAGGAAAATATTAATCTCAGT
TCTTCCCTCTATTGTTCCAAGCCACCAGTATCTGTGCTATAATAGGAAACGCCATCAGTC
TGAACATTGCATTTTCTGTGCCTGACTAGAAACAGATGAGAACAAGATCTACAAACAATG
TTTCAGCTGCTTGCCATTTACTGTGAAGAAAATATATTATAGGCCAGCTCTAATGACCAT
AGTTGATGGACTATCTAAGGTTTGCATCCACATAGGATCAAAGCTGATAGAGAAGATTCT
TCTTAACATTCCTCCTGACTGGCTCAACAGAGTAATAGCCCCTCCCTCTGATGTCACCTA
TGGCATGGTCGCTGCAGACCTGCTCCACTCCTTGCTGGCAGTCAGCGGGGCTCTTCGTGT
CCTGAAGGTGCAGAGCCTCTTTGTGTTGGATGAAAACAGCTACCCGCTGCAACAGGACTT
CTCCCTCCTGGATTTTTATCCCAACGATGTGAAGCATAAGTCCCATGCCCCTCTCTGAGG
CCAGATGAAGAAACTGCAGTCATTTCATGGAAAAGCACTGAAATGGTGTCTTTCAAAGTG
AATTACCAGGGCTTTTTCTCAGGGTTTTTAAATAAGAATATTTTATAAAGAGAATTGTGC
TACATATATTTATTAAAACTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCTGATATGGACAGCTGCTTTTTTTCAGACTTAATTTAGGAAAATATTAATCTCAGT
TCTTCCCTCTATTGTTCCAAGCCACCAGTATCTGTGCTATAATAGGAAACGCCATCAGTC
TGAACATTGCATTTTCTGTGCCTGACTAGAAACAGATGAGAACAAGATCTACAAACAATG
TTTCAGCTGCTTGCCATTTACTGTGAAGAAAATATATTATAGGCCAGCTCTAATGACCAT
AGTTGATGGACTATCTAAGGTTTGCATCCACATAGGATCAAAGCTGATAGAGAAGATTCT
TCTTAACATTCCTCCTGACTGGCTCAACAGAGTAATAGCCCCTCCCTCTGATGTCACCTA
TGGCATGGTCGCTGCAGACCTGCTCCACTCCTTGCTGGCAGTCAGCGGGGCTCTTCGTGT
CCTGAAGGTGCAGAGCCTCTTTGTGTTGGATGAAAACAGCTACCCGCTGCAACAGGACTT
CTCCCTCCTGGATTTTTATCCCAACGATGTGAAGCATAAGTCCCATGCCCCTCTCTGAGG
CCAGATGAAGAAACTGCAGTCATTTCATGGAAAAGCACTGAAATGGTGTCTTTCAAAGTG
AATTACCAGGGCTTTTTCTCAGGGTTTTTAAATAAGAATATTTTATAAAGAGAATTGTGC
TACATATATTTATTAAAACTTTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61872904|ref|XP_585097.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61872904|ref|XP_585097.1|

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-137, gnl|bosTau2|chr28 (32016402-32016543)
               


               
               337-680, gnl|bosTau2|chr28 (32016725-32017064)
               

               
               337-680, gnl|canFam2|chr4 (37932699-37932949)
               

               
               337-680, gnl|dasNov1|scaffold_62336 (2891-2638)
               

               
               337-680, gnl|galGal2|chr6 (2176840-2177114)
               

               
               337-680, gnl|hg17|chr10 (46358153-46358437)
               

               
               337-680, gnl|Hg17|chr10 (88940219-88940568)
               

               
               337-680, gnl|mm7|chr14 (31670228-31669946)
               

               
               337-680, gnl|monDom2|scaffold_14 (21755802-21755518)
               

               
               337-680, gnl|oryCun1|scaffold_134319 (15625-15907)
               

               
               337-680, gnl|panTro1|chr8 (47354171-47354457)
               

               
               337-680, gnl|rheMac2|chr9 (49433647-49433931)
               

               
               337-680, gnl|rn3|chr16 (9868765-9868513)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-137, gnl|bosTau2|chr28 (32016402-32016543)
               


               
               337-680, gnl|bosTau2|chr28 (32016725-32017064)
               

               
               337-680, gnl|canFam2|chr4 (37932699-37932949)
               

               
               337-680, gnl|dasNov1|scaffold_62336 (2891-2638)
               

               
               337-680, gnl|galGal2|chr6 (2176840-2177114)
               

               
               337-680, gnl|hg17|chr10 (46358153-46358437)
               

               
               337-680, gnl|Hg17|chr10 (88940219-88940568)
               

               
               337-680, gnl|mm7|chr14 (31670228-31669946)
               

               
               337-680, gnl|monDom2|scaffold_14 (21755802-21755518)
               

               
               337-680, gnl|oryCun1|scaffold_134319 (15625-15907)
               

               
               337-680, gnl|panTro1|chr8 (47354171-47354457)
               

               
               337-680, gnl|rheMac2|chr9 (49433647-49433931)
               

               
               337-680, gnl|rn3|chr16 (9868765-9868513)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	1-137, gnl\|bosTau2\|chr28 (32016402-32016543)

	337-680, gnl\|bosTau2\|chr28 (32016725-32017064)
	337-680, gnl\|canFam2\|chr4 (37932699-37932949)
	337-680, gnl\|dasNov1\|scaffold_62336 (2891-2638)
	337-680, gnl\|galGal2\|chr6 (2176840-2177114)
	337-680, gnl\|hg17\|chr10 (46358153-46358437)
	337-680, gnl\|Hg17\|chr10 (88940219-88940568)
	337-680, gnl\|mm7\|chr14 (31670228-31669946)
	337-680, gnl\|monDom2\|scaffold_14 (21755802-21755518)
	337-680, gnl\|oryCun1\|scaffold_134319 (15625-15907)
	337-680, gnl\|panTro1\|chr8 (47354171-47354457)
	337-680, gnl\|rheMac2\|chr9 (49433647-49433931)
	337-680, gnl\|rn3\|chr16 (9868765-9868513)