Non-Coding RNA Search

Ss1.1-Pig1-52E16.5

Sequence:


               
               AGAACGTGGGCCTGACCCTGCGGAAGCTCATCGGGAGTGTGGACGACCTCCTGCCCTCCT
TGCCGTCATCTTCTCGGACAGAAATCGAGGGGACGCAGAAACTGCTCAACAAGGACCTGG
CGGAGCTCATCAATAAGATGAGACTGGCCCAGCAAAATGCCGTGACCTCCCTGAGCGAGG
AGTGCAAACGTCAGATGCTCACGGCCTCCCACACGCTGGCCGTGGATGCCAAGAACCTGC
TGGACGCCGTGGACCAGGCCAAGGTTCTGGCCAACCTGGCCCACCCACCGGCAGAGTGAA
GAGGGTGGCGCCCCCCGCCTGCCGTGTCCCTCCCTGCCCCAGCCTCTGCCTTGCCTTCGG
CCTCGTGGGTCCTCTGGGGGGCAGGCCGAGGGGAGTCCTTCTTTCCTTGCCATTTTGCAC
GACCCCTCTCCCCACCCCACCCCCAGACTGTGCTGCTCAGGCTGCAGCTGGACAGAGGGG
ACTCAAGACTGCAGACACCAGGGGGTGACCAGGAGGGCTCAGAGGGAGCCGGCTGCTGCC
TGCAGCGCCAGCCACTCCCCAGCAGCCACTCCTCGCCTGGCCCGATGGGGGGCCACGCCA
GGGCCCCTAGAGCCCATGATGGTGTGCGAGGACCGGGCAGGCCAAGTTGGGAACCAAGCT
ACTCCTCTCCTTCCTCTTCTGCCCACGGAGGTCCCCTCACACCCCGTCACTGAGGGAGGG
CCTGGAGGGGCTTTCTTTGGGGAGGTGTGACGAGGGATGGACCTGGCTTTCTTGTACAGT
GTATATTGGAATTTATTTAATGTGAGTTTGGTCTGGACTGACAGCCGTGTGCCTACGAAG
GGGGACCTGGGACAGTCCAGGAACAAGCCACTGGGAGCTGGCGCTCAGGAGGCTATGGTG
CCCACAGCCGGGCCGGAGAAGGGGAGAGATGAGGCCCAAAGAGGACTTGGATGGGGTCCG
TGTCCCTTTTCCTTCCCCCTCTGCCCCTTCCTTCTCTTTTCTTACTCCTCCTTTTCTCTC
CCCCGTTCTCATCCACTCCCTCCCTCCCTCTCTTGTGTTTGTGCAGAACACTCTTTTACC
TTCTTTCTATTTGACTTGGGAATGAATTAAAATTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACGTGGGCCTGACCCTGCGGAAGCTCATCGGGAGTGTGGACGACCTCCTGCCCTCCT
TGCCGTCATCTTCTCGGACAGAAATCGAGGGGACGCAGAAACTGCTCAACAAGGACCTGG
CGGAGCTCATCAATAAGATGAGACTGGCCCAGCAAAATGCCGTGACCTCCCTGAGCGAGG
AGTGCAAACGTCAGATGCTCACGGCCTCCCACACGCTGGCCGTGGATGCCAAGAACCTGC
TGGACGCCGTGGACCAGGCCAAGGTTCTGGCCAACCTGGCCCACCCACCGGCAGAGTGAA
GAGGGTGGCGCCCCCCGCCTGCCGTGTCCCTCCCTGCCCCAGCCTCTGCCTTGCCTTCGG
CCTCGTGGGTCCTCTGGGGGGCAGGCCGAGGGGAGTCCTTCTTTCCTTGCCATTTTGCAC
GACCCCTCTCCCCACCCCACCCCCAGACTGTGCTGCTCAGGCTGCAGCTGGACAGAGGGG
ACTCAAGACTGCAGACACCAGGGGGTGACCAGGAGGGCTCAGAGGGAGCCGGCTGCTGCC
TGCAGCGCCAGCCACTCCCCAGCAGCCACTCCTCGCCTGGCCCGATGGGGGGCCACGCCA
GGGCCCCTAGAGCCCATGATGGTGTGCGAGGACCGGGCAGGCCAAGTTGGGAACCAAGCT
ACTCCTCTCCTTCCTCTTCTGCCCACGGAGGTCCCCTCACACCCCGTCACTGAGGGAGGG
CCTGGAGGGGCTTTCTTTGGGGAGGTGTGACGAGGGATGGACCTGGCTTTCTTGTACAGT
GTATATTGGAATTTATTTAATGTGAGTTTGGTCTGGACTGACAGCCGTGTGCCTACGAAG
GGGGACCTGGGACAGTCCAGGAACAAGCCACTGGGAGCTGGCGCTCAGGAGGCTATGGTG
CCCACAGCCGGGCCGGAGAAGGGGAGAGATGAGGCCCAAAGAGGACTTGGATGGGGTCCG
TGTCCCTTTTCCTTCCCCCTCTGCCCCTTCCTTCTCTTTTCTTACTCCTCCTTTTCTCTC
CCCCGTTCTCATCCACTCCCTCCCTCCCTCTCTTGTGTTTGTGCAGAACACTCTTTTACC
TTCTTTCTATTTGACTTGGGAATGAATTAAAATTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|49258494|pdb|1PV3|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49258494|pdb|1PV3|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               799-906, + strand, RNAz p=0.605111

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               799-906, + strand, RNAz p=0.605111

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_173175, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_173175, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               555-1116, gnl|bosTau2|chr5 (34007518-34006906)
               

               
               555-1116, gnl|Hg17|chr8 (27372193-27372811)
               

               
               555-1116, gnl|Mm7|chr14 (61014273-61013740)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               555-1116, gnl|bosTau2|chr5 (34007518-34006906)
               

               
               555-1116, gnl|Hg17|chr8 (27372193-27372811)
               

               
               555-1116, gnl|Mm7|chr14 (61014273-61013740)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               clu (0.478583)
               

               
               fce (0.271592)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)
               

               
               fce (0.271592)
               

               
               ecc (0.115035)

	555-1116, gnl\|bosTau2\|chr5 (34007518-34006906)
	555-1116, gnl\|Hg17\|chr8 (27372193-27372811)
	555-1116, gnl\|Mm7\|chr14 (61014273-61013740)