Non-Coding RNA Search

Ss1.1-Pig1-52F12.5

Sequence:


               
               GGGGGAGGAAATCGCTCCGGGAGCCGCATCCTGCTTGCGCTAGCGTCTGCAGAGAAAAGG
GTGGAGGTGCCGAAAGGAGGAAGCAGAAGAGGCTACGGAAGACAAGAAAGTGTTGGAGCC
GGTTCGGCTTTAGAGTGTGGTGAAGGGTACTTTTCATGGTGCATGGAAGGAAAGCCAATG
CGCAGGTAGGCATTTAGGAAGAAAATCTTCTGTTTCAATAAATGAAATTTACGTAATAAT
CTAGGGCTTCATTTAAATCTTTTTAAAAGATTGTCAAATCTTACCAAATTCTGTTTAGAA
TTAAAAATTCTTGTAAAATAAAGGTAATATTAGGAATTAATAGCTTTTTAAATAAAATAA
AATGTAGAACTTAAATTTCTAAAGAGTGCTTTGAGCTTTATGTAGTTAACACTTCAATTT
TCTTTTTTGCGTTGTAATTTTTTTGTGATAATATTATGCGTACTGTGATACTATACAGAT
TAGTTATAGTCTTCAATTCCCTGTAGAATACAGAGGGTTCTGTTGCCATATAAGAATAAT
GATTTTTTATAATACGCTGTACTGAATGTCTAATTATGGTTTTGGTTATGTCACTCATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGAGGAAATCGCTCCGGGAGCCGCATCCTGCTTGCGCTAGCGTCTGCAGAGAAAAGG
GTGGAGGTGCCGAAAGGAGGAAGCAGAAGAGGCTACGGAAGACAAGAAAGTGTTGGAGCC
GGTTCGGCTTTAGAGTGTGGTGAAGGGTACTTTTCATGGTGCATGGAAGGAAAGCCAATG
CGCAGGTAGGCATTTAGGAAGAAAATCTTCTGTTTCAATAAATGAAATTTACGTAATAAT
CTAGGGCTTCATTTAAATCTTTTTAAAAGATTGTCAAATCTTACCAAATTCTGTTTAGAA
TTAAAAATTCTTGTAAAATAAAGGTAATATTAGGAATTAATAGCTTTTTAAATAAAATAA
AATGTAGAACTTAAATTTCTAAAGAGTGCTTTGAGCTTTATGTAGTTAACACTTCAATTT
TCTTTTTTGCGTTGTAATTTTTTTGTGATAATATTATGCGTACTGTGATACTATACAGAT
TAGTTATAGTCTTCAATTCCCTGTAGAATACAGAGGGTTCTGTTGCCATATAAGAATAAT
GATTTTTTATAATACGCTGTACTGAATGTCTAATTATGGTTTTGGTTATGTCACTCATGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               121-600, gnl|bosTau2|chr16 (41853910-41853422)
               

               
               121-600, gnl|Hg17|chr1 (170416798-170417275)
               

               
               121-600, gnl|Mm7|chr1 (161092823-161092139)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-600, gnl|bosTau2|chr16 (41853910-41853422)
               

               
               121-600, gnl|Hg17|chr1 (170416798-170417275)
               

               
               121-600, gnl|Mm7|chr1 (161092823-161092139)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	121-600, gnl\|bosTau2\|chr16 (41853910-41853422)
	121-600, gnl\|Hg17\|chr1 (170416798-170417275)
	121-600, gnl\|Mm7\|chr1 (161092823-161092139)