Non-Coding RNA Search

Ss1.1-Pig1-52G19.5

Sequence:


               
               CAAGAACTGTGCCTTATAGCATTTGGGGACCAGGGGGTGACTGCCCCTCCCTGAAATATC
CCACAGCCTCTTCCCTTTTCCCCGGTGCCATGTTCAGAGCCATTGGAAAGCTCGGGGTCT
TGCCCTCAGCCCCTGGCTCGTTTCGCATCGCAGTGAGGTGAAGAGGAGAGTAGGTCAAAG
ATTTCTGATAGTGTTTCAAGTTCTGCCCACCTGCTTCCTCTAACCCGCCCCTGGTCTGCT
CCCCAGCTGTTGGAAGGATAGCACGAGCCCCCTACCCTCAAGCTTCTCCCCCCTTTAATT
TATTCCCCCTTAACAAGCTCTCCTCCGCCTTCCTGCCCCAGCCCCCTTCTCAGAACCTCC
TGGCATAGGCCCTTTGGACCGAGTTTCTCAGGGATGCCCATGCCACCCCCCGGCTCCTCT
TGGCATCAGTCTGCAGTCCGGCCTGGGAGCTGGAGCCTGGGTGTTTGGGGACATCTTGCC
TCAATTGTATGATTCTCTGCCATGGGCGTGATTGTGCCCTACACAGCTGGGCAAAACTCT
GTGCTGTCCCAGGAGAGAAGCCCTTCAGCACCCAGGAACCGGGCTCTGGGCCTGGACCTC
TCTGCACACCCACACAGCTGGGCCCTGCCTGTGTCCCTTGGAACCCAGGACTTTCCTGAG
CTCCCAGGAGGCATCCGGAAAAAAACACACCCTGAGTTTAACTGGCCTGACACGCTTCTC
CAGGGAAGACCTGTGAACCTGAGCCAAAGGGCTGGGGTACACTTGTTTACTGTGTAAGCA
AGAGTAGAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGAACTGTGCCTTATAGCATTTGGGGACCAGGGGGTGACTGCCCCTCCCTGAAATATC
CCACAGCCTCTTCCCTTTTCCCCGGTGCCATGTTCAGAGCCATTGGAAAGCTCGGGGTCT
TGCCCTCAGCCCCTGGCTCGTTTCGCATCGCAGTGAGGTGAAGAGGAGAGTAGGTCAAAG
ATTTCTGATAGTGTTTCAAGTTCTGCCCACCTGCTTCCTCTAACCCGCCCCTGGTCTGCT
CCCCAGCTGTTGGAAGGATAGCACGAGCCCCCTACCCTCAAGCTTCTCCCCCCTTTAATT
TATTCCCCCTTAACAAGCTCTCCTCCGCCTTCCTGCCCCAGCCCCCTTCTCAGAACCTCC
TGGCATAGGCCCTTTGGACCGAGTTTCTCAGGGATGCCCATGCCACCCCCCGGCTCCTCT
TGGCATCAGTCTGCAGTCCGGCCTGGGAGCTGGAGCCTGGGTGTTTGGGGACATCTTGCC
TCAATTGTATGATTCTCTGCCATGGGCGTGATTGTGCCCTACACAGCTGGGCAAAACTCT
GTGCTGTCCCAGGAGAGAAGCCCTTCAGCACCCAGGAACCGGGCTCTGGGCCTGGACCTC
TCTGCACACCCACACAGCTGGGCCCTGCCTGTGTCCCTTGGAACCCAGGACTTTCCTGAG
CTCCCAGGAGGCATCCGGAAAAAAACACACCCTGAGTTTAACTGGCCTGACACGCTTCTC
CAGGGAAGACCTGTGAACCTGAGCCAAAGGGCTGGGGTACACTTGTTTACTGTGTAAGCA
AGAGTAGAATGT

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               40-157, - strand, RNAz p=0.640286
               

               
               315-427, - strand, RNAz p=0.960883
               

               
               339-453, - strand, RNAz p=0.915566
               

               
               529-643, - strand, RNAz p=0.915507

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-157, - strand, RNAz p=0.640286
               

               
               315-427, - strand, RNAz p=0.960883
               

               
               339-453, - strand, RNAz p=0.915566
               

               
               529-643, - strand, RNAz p=0.915507

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               69-171, + strand, RNAmicro p=0.999912
               

               
               71-204, - strand, RNAmicro p=0.999698

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               69-171, + strand, RNAmicro p=0.999912
               

               
               71-204, - strand, RNAmicro p=0.999698

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC041366, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC041366, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-788, gnl|bosTau2|chr15 (14440689-14439896)
               

               
               1-788, gnl|canFam2|chr5 (17557397-17556736)
               

               
               1-788, gnl|dasNov1|scaffold_39894 (12231-12877)
               

               
               1-788, gnl|echTel1|scaffold_306469 (12116-11463)
               

               
               1-788, gnl|hg17|chr11 (118731105-118731739)
               

               
               1-788, gnl|Hg17|chr11 (118731939-118731193)
               

               
               1-788, gnl|loxAfr1|scaffold_51232 (8753-8097)
               

               
               1-788, gnl|mm7|chr9 (44030000-44029358)
               

               
               1-788, gnl|Mm7|chr9 (44029149-44029915)
               

               
               1-788, gnl|monDom2|scaffold_2 (119122593-119121921)
               

               
               1-788, gnl|oryCun1|scaffold_197393 (44336-43727)
               

               
               1-788, gnl|panTro1|chr9 (120753926-120754560)
               

               
               1-788, gnl|rheMac2|chr14 (117767914-117768549)
               

               
               1-788, gnl|rn3|chr8 (47086739-47086087)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-788, gnl|bosTau2|chr15 (14440689-14439896)
               

               
               1-788, gnl|canFam2|chr5 (17557397-17556736)
               

               
               1-788, gnl|dasNov1|scaffold_39894 (12231-12877)
               

               
               1-788, gnl|echTel1|scaffold_306469 (12116-11463)
               

               
               1-788, gnl|hg17|chr11 (118731105-118731739)
               

               
               1-788, gnl|Hg17|chr11 (118731939-118731193)
               

               
               1-788, gnl|loxAfr1|scaffold_51232 (8753-8097)
               

               
               1-788, gnl|mm7|chr9 (44030000-44029358)
               

               
               1-788, gnl|Mm7|chr9 (44029149-44029915)
               

               
               1-788, gnl|monDom2|scaffold_2 (119122593-119121921)
               

               
               1-788, gnl|oryCun1|scaffold_197393 (44336-43727)
               

               
               1-788, gnl|panTro1|chr9 (120753926-120754560)
               

               
               1-788, gnl|rheMac2|chr14 (117767914-117768549)
               

               
               1-788, gnl|rn3|chr8 (47086739-47086087)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nms (0.213858)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               med (0.116252)

	40-157, - strand, RNAz p=0.640286
	315-427, - strand, RNAz p=0.960883
	339-453, - strand, RNAz p=0.915566
	529-643, - strand, RNAz p=0.915507

	69-171, + strand, RNAmicro p=0.999912
	71-204, - strand, RNAmicro p=0.999698

	1-788, gnl\|bosTau2\|chr15 (14440689-14439896)
	1-788, gnl\|canFam2\|chr5 (17557397-17556736)
	1-788, gnl\|dasNov1\|scaffold_39894 (12231-12877)
	1-788, gnl\|echTel1\|scaffold_306469 (12116-11463)
	1-788, gnl\|hg17\|chr11 (118731105-118731739)
	1-788, gnl\|Hg17\|chr11 (118731939-118731193)
	1-788, gnl\|loxAfr1\|scaffold_51232 (8753-8097)
	1-788, gnl\|mm7\|chr9 (44030000-44029358)
	1-788, gnl\|Mm7\|chr9 (44029149-44029915)
	1-788, gnl\|monDom2\|scaffold_2 (119122593-119121921)
	1-788, gnl\|oryCun1\|scaffold_197393 (44336-43727)
	1-788, gnl\|panTro1\|chr9 (120753926-120754560)
	1-788, gnl\|rheMac2\|chr14 (117767914-117768549)
	1-788, gnl\|rn3\|chr8 (47086739-47086087)

	nms (0.213858)
	nep (0.183925)
	fbs (0.175346)
	eye (0.170503)
	bfe (0.149858)
	pla (0.133672)
	cov (0.132153)
	med (0.116252)