Ss1.1-Pig1-52H12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTGTCTGATCTAAAGGTCATTCACTGGAACTCCCCCAAGAAGCTGCGGGTGAAGAACAA GCATGTGGAGTTTTTCCGCAACCTCTACCTGACCTTCCTGGAGTACGACGGAAACCTCCT GCGACGGGAGCTGTTGGGCTGCCCCAGCGAGGCTGACGTTAACAGTGAAAACCTCCAGAA GCAGCTCTCCGAACTGGATGAGGACGACTTGTGTTATGAGTTCCGGCGAGAGCGTTTCAC CGTCCACCGAACCCACCTGTACTTCTTGCACTATGAGTATGAGCCCGCTTCAGACAACAC AGACGTCACCCTGGTTGCTCAGCTCTCCATGGACAGGCTCCAGATGCTCGAAGCCATCTG CAAGCACTGGGAGGGGCCCATCAGCCTGGCTCTCTACCTGTCCGACGCCGAGGCCCAGCA GTTCCTCCGTTACGCGCAGGGCTCCGAGGTGCTCATGGGCCGCCACAACGTGGCCTACCA CATCGTGTACAAGGAGGGCCAGTTCTACCCCGTGAACCTGCTGCGCAACGTGGCCATGAA GCACGTGGGCACGCCCTACATGTTCCTGTCCGACATCGACTTCCTGCCCATGTACGGGCT CTATGAGTACCTCAGGAAGTCCGTCATCCAGCTCGACCTGGCCAACACCAAGAAGGCAAT GATCGTCCCCGCCTTCGAGACGCTGCGCTACCGGCTCTCCTTCCCCAAGTCCAAGGCGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTGTCTGATCTAAAGGTCATTCACTGGAACTCCCCCAAGAAGCTGCGGGTGAAGAACAA GCATGTGGAGTTTTTCCGCAACCTCTACCTGACCTTCCTGGAGTACGACGGAAACCTCCT GCGACGGGAGCTGTTGGGCTGCCCCAGCGAGGCTGACGTTAACAGTGAAAACCTCCAGAA GCAGCTCTCCGAACTGGATGAGGACGACTTGTGTTATGAGTTCCGGCGAGAGCGTTTCAC CGTCCACCGAACCCACCTGTACTTCTTGCACTATGAGTATGAGCCCGCTTCAGACAACAC AGACGTCACCCTGGTTGCTCAGCTCTCCATGGACAGGCTCCAGATGCTCGAAGCCATCTG CAAGCACTGGGAGGGGCCCATCAGCCTGGCTCTCTACCTGTCCGACGCCGAGGCCCAGCA GTTCCTCCGTTACGCGCAGGGCTCCGAGGTGCTCATGGGCCGCCACAACGTGGCCTACCA CATCGTGTACAAGGAGGGCCAGTTCTACCCCGTGAACCTGCTGCGCAACGTGGCCATGAA GCACGTGGGCACGCCCTACATGTTCCTGTCCGACATCGACTTCCTGCCCATGTACGGGCT CTATGAGTACCTCAGGAAGTCCGTCATCCAGCTCGACCTGGCCAACACCAAGAAGGCAAT GATCGTCCCCGCCTTCGAGACGCTGCGCTACCGGCTCTCCTTCCCCAAGTCCAAGGCGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 334-452, - strand, RNAz p=0.583087 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 334-452, - strand, RNAz p=0.583087 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 6-148, gnl|bosTau2|chr15 (47742738-47742879) | |
| 6-148, gnl|Hg17|chr11 (45904559-45904700) | |
| 6-148, gnl|Mm7|chr2 (92218150-92218009) | |
| 334-623, gnl|bosTau2|chr15 (47743606-47743895) | |
| 334-623, gnl|canFam2|chr18 (46532783-46532491) | |
| 334-623, gnl|danRer3|chr18 (46702174-46702463) | |
| 334-623, gnl|dasNov1|scaffold_4877 (11009-11301) | |
| 334-623, gnl|echTel1|scaffold_311183 (57102-57393) | |
| 334-623, gnl|fr1|chrUn (299024535-299024826) | |
| 334-623, gnl|galGal2|chr5 (21186762-21186458) | |
| 334-623, gnl|hg17|chr11 (45905437-45905729) | |
| 334-623, gnl|Hg17|chr11 (45905439-45905731) | |
| 334-623, gnl|loxAfr1|scaffold_30564 (16662-16955) | |
| 334-623, gnl|mm7|chr2 (92217319-92217027) | |
| 334-623, gnl|Mm7|chr2 (92217315-92217028) | |
| 334-623, gnl|monDom2|scaffold_33 (11936652-11936956) | |
| 334-623, gnl|oryCun1|scaffold_204989 (55685-55977) | |
| 334-623, gnl|panTro1|chr9 (46411590-46411882) | |
| 334-623, gnl|rheMac2|chr14 (26206816-26206524) | |
| 334-623, gnl|rn3|chr3 (76660532-76660240) | |
| 334-623, gnl|tetNig1|chrUn_random (6458357-6458070) | |
| 334-623, gnl|xenTro1|scaffold_76 (1631210-1631502) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-148, gnl|bosTau2|chr15 (47742738-47742879) | |
| 6-148, gnl|Hg17|chr11 (45904559-45904700) | |
| 6-148, gnl|Mm7|chr2 (92218150-92218009) | |
| 334-623, gnl|bosTau2|chr15 (47743606-47743895) | |
| 334-623, gnl|canFam2|chr18 (46532783-46532491) | |
| 334-623, gnl|danRer3|chr18 (46702174-46702463) | |
| 334-623, gnl|dasNov1|scaffold_4877 (11009-11301) | |
| 334-623, gnl|echTel1|scaffold_311183 (57102-57393) | |
| 334-623, gnl|fr1|chrUn (299024535-299024826) | |
| 334-623, gnl|galGal2|chr5 (21186762-21186458) | |
| 334-623, gnl|hg17|chr11 (45905437-45905729) | |
| 334-623, gnl|Hg17|chr11 (45905439-45905731) | |
| 334-623, gnl|loxAfr1|scaffold_30564 (16662-16955) | |
| 334-623, gnl|mm7|chr2 (92217319-92217027) | |
| 334-623, gnl|Mm7|chr2 (92217315-92217028) | |
| 334-623, gnl|monDom2|scaffold_33 (11936652-11936956) | |
| 334-623, gnl|oryCun1|scaffold_204989 (55685-55977) | |
| 334-623, gnl|panTro1|chr9 (46411590-46411882) | |
| 334-623, gnl|rheMac2|chr14 (26206816-26206524) | |
| 334-623, gnl|rn3|chr3 (76660532-76660240) | |
| 334-623, gnl|tetNig1|chrUn_random (6458357-6458070) | |
| 334-623, gnl|xenTro1|scaffold_76 (1631210-1631502) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) |