Ss1.1-Pig1-52L14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTGCGTCCTCCACCCCTGCCTCCAGCAGCGGGAATGTCTTCGGTGCCTCTTCAAGCAC CAGCAGCTCCAGCTCCTTCTCGTTCGGACAGTCTTCTGCCAACACCGGAGGGGGCCTCTT TGGCCAGAGCAACCTTCCTGCCTTTGGTCAGAGTCCTGGCTTCGGGCAGGGAGGCTCTGT GTTTGGTGGCACCTCGGCCGCCACCACGACGGCCTCCTCCTCGGGGTTTAGCTTTTGTCA AGCTTCAGGTTTTGGGTCTAGTAATACTGGTTCTTTGTTTGGTCAAGCAGCCAATACCGG GGGCACAGTCTTCGGCCAGCCATCGTCCTCTTCTGGCGGGGGTATGTTCGGGTCTGGAAA CACTGGAAGAGGGGGCGGTTTCTTCAGCGGCCTCGGAGGGAAACCCAGCCAGGACGCAGC CAACAAAAACCCATTCAGCTCGGCCAGCGGGGGCTTTGGATCTACAGCCACCCCAAATAC CTCCAACCTGTTTGGAAACAGTGGGGCCAAGACGTTTGGTGGATTTGCCAGCTCCTCGTT CGGAGACCAGAAACCTACTGGCACTTTCAGCTCTGGAGGAGGAAGCGTGGCCTCCCAAGG CTTTGGGTTTTCCACCCCGAATAAAACAGGTGGCTTCGGTGCTGCTCCAGTGTTTGGCAG CCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCC AGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTGCGTCCTCCACCCCTGCCTCCAGCAGCGGGAATGTCTTCGGTGCCTCTTCAAGCAC CAGCAGCTCCAGCTCCTTCTCGTTCGGACAGTCTTCTGCCAACACCGGAGGGGGCCTCTT TGGCCAGAGCAACCTTCCTGCCTTTGGTCAGAGTCCTGGCTTCGGGCAGGGAGGCTCTGT GTTTGGTGGCACCTCGGCCGCCACCACGACGGCCTCCTCCTCGGGGTTTAGCTTTTGTCA AGCTTCAGGTTTTGGGTCTAGTAATACTGGTTCTTTGTTTGGTCAAGCAGCCAATACCGG GGGCACAGTCTTCGGCCAGCCATCGTCCTCTTCTGGCGGGGGTATGTTCGGGTCTGGAAA CACTGGAAGAGGGGGCGGTTTCTTCAGCGGCCTCGGAGGGAAACCCAGCCAGGACGCAGC CAACAAAAACCCATTCAGCTCGGCCAGCGGGGGCTTTGGATCTACAGCCACCCCAAATAC CTCCAACCTGTTTGGAAACAGTGGGGCCAAGACGTTTGGTGGATTTGCCAGCTCCTCGTT CGGAGACCAGAAACCTACTGGCACTTTCAGCTCTGGAGGAGGAAGCGTGGCCTCCCAAGG CTTTGGGTTTTCCACCCCGAATAAAACAGGTGGCTTCGGTGCTGCTCCAGTGTTTGGCAG CCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCC AGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 46-768, + strand, RNAz p=0.983017 | |
| 64-745, - strand, RNAz p=0.995338 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 46-768, + strand, RNAz p=0.983017 | |
| 64-745, - strand, RNAz p=0.995338 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 7-250, gnl|bosTau2|chr11 (81795284-81795527) | |
| 7-250, gnl|canFam2|chr9 (56217580-56217257) | |
| 7-250, gnl|dasNov1|scaffold_109233 (5579-5261) | |
| 7-250, gnl|echTel1|scaffold_283605 (34069-34391) | |
| 7-250, gnl|fr1|chrUn (42598400-42598688) | |
| 7-250, gnl|galGal2|chr17 (4221137-4220829) | |
| 7-250, gnl|hg17|chr9 (131103655-131103976) | |
| 7-250, gnl|Hg17|chr9 (131103715-131103958) | |
| 7-250, gnl|loxAfr1|scaffold_3511 (25303-24982) | |
| 7-250, gnl|mm7|chr2 (32041979-32042300) | |
| 7-250, gnl|Mm7|chr2 (32042039-32042282) | |
| 7-250, gnl|monDom2|scaffold_51 (6713989-6714315) | |
| 7-250, gnl|oryCun1|scaffold_202165 (83289-83607) | |
| 7-250, gnl|panTro1|chr11 (115980756-115981077) | |
| 7-250, gnl|rheMac2|chr15 (7551600-7551279) | |
| 7-250, gnl|rn3|chr3 (11037687-11038008) | |
| 7-250, gnl|tetNig1|chrUn_random (126967100-126966767) | |
| 7-250, gnl|xenTro1|scaffold_191 (435698-436021) | |
| 316-479, gnl|bosTau2|chr11 (81812539-81812702) | |
| 316-479, gnl|Hg17|chr9 (131120149-131120312) | |
| 316-479, gnl|Mm7|chr2 (32046627-32046790) | |
| 627-768, gnl|bosTau2|chr11 (81820868-81821009) | |
| 627-768, gnl|canFam2|chr9 (56190933-56190697) | |
| 627-768, gnl|danRer3|chrNA (168300697-168300904) | |
| 627-768, gnl|dasNov1|scaffold_80629 (4517-4292) | |
| 627-768, gnl|fr1|chrUn (42600605-42600795) | |
| 627-768, gnl|galGal2|chr17 (4215575-4215340) | |
| 627-768, gnl|hg17|chr9 (131133068-131133302) | |
| 627-768, gnl|Hg17|chr9 (131133098-131133239) | |
| 627-768, gnl|loxAfr1|scaffold_25201 (14322-14561) | |
| 627-768, gnl|mm7|chr2 (32054686-32054912) | |
| 627-768, gnl|Mm7|chr2 (32054711-32054852) | |
| 627-768, gnl|monDom2|scaffold_51 (6732298-6732535) | |
| 627-768, gnl|panTro1|chr11 (116010210-116010447) | |
| 627-768, gnl|rheMac2|chr15 (7520787-7520553) | |
| 627-768, gnl|rn3|chr3 (11056356-11056582) | |
| 627-768, gnl|tetNig1|chrUn_random (126964722-126964537) | |
| 627-768, gnl|xenTro1|scaffold_191 (540228-540440) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-250, gnl|bosTau2|chr11 (81795284-81795527) | |
| 7-250, gnl|canFam2|chr9 (56217580-56217257) | |
| 7-250, gnl|dasNov1|scaffold_109233 (5579-5261) | |
| 7-250, gnl|echTel1|scaffold_283605 (34069-34391) | |
| 7-250, gnl|fr1|chrUn (42598400-42598688) | |
| 7-250, gnl|galGal2|chr17 (4221137-4220829) | |
| 7-250, gnl|hg17|chr9 (131103655-131103976) | |
| 7-250, gnl|Hg17|chr9 (131103715-131103958) | |
| 7-250, gnl|loxAfr1|scaffold_3511 (25303-24982) | |
| 7-250, gnl|mm7|chr2 (32041979-32042300) | |
| 7-250, gnl|Mm7|chr2 (32042039-32042282) | |
| 7-250, gnl|monDom2|scaffold_51 (6713989-6714315) | |
| 7-250, gnl|oryCun1|scaffold_202165 (83289-83607) | |
| 7-250, gnl|panTro1|chr11 (115980756-115981077) | |
| 7-250, gnl|rheMac2|chr15 (7551600-7551279) | |
| 7-250, gnl|rn3|chr3 (11037687-11038008) | |
| 7-250, gnl|tetNig1|chrUn_random (126967100-126966767) | |
| 7-250, gnl|xenTro1|scaffold_191 (435698-436021) | |
| 316-479, gnl|bosTau2|chr11 (81812539-81812702) | |
| 316-479, gnl|Hg17|chr9 (131120149-131120312) | |
| 316-479, gnl|Mm7|chr2 (32046627-32046790) | |
| 627-768, gnl|bosTau2|chr11 (81820868-81821009) | |
| 627-768, gnl|canFam2|chr9 (56190933-56190697) | |
| 627-768, gnl|danRer3|chrNA (168300697-168300904) | |
| 627-768, gnl|dasNov1|scaffold_80629 (4517-4292) | |
| 627-768, gnl|fr1|chrUn (42600605-42600795) | |
| 627-768, gnl|galGal2|chr17 (4215575-4215340) | |
| 627-768, gnl|hg17|chr9 (131133068-131133302) | |
| 627-768, gnl|Hg17|chr9 (131133098-131133239) | |
| 627-768, gnl|loxAfr1|scaffold_25201 (14322-14561) | |
| 627-768, gnl|mm7|chr2 (32054686-32054912) | |
| 627-768, gnl|Mm7|chr2 (32054711-32054852) | |
| 627-768, gnl|monDom2|scaffold_51 (6732298-6732535) | |
| 627-768, gnl|panTro1|chr11 (116010210-116010447) | |
| 627-768, gnl|rheMac2|chr15 (7520787-7520553) | |
| 627-768, gnl|rn3|chr3 (11056356-11056582) | |
| 627-768, gnl|tetNig1|chrUn_random (126964722-126964537) | |
| 627-768, gnl|xenTro1|scaffold_191 (540228-540440) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) |