Non-Coding RNA Search

Ss1.1-Pig1-52N14.5

Sequence:


               
               AAAAAATGAAAATTCATAAGTAAAAATGTCTCACAGTATCAATTAAGAATGTATTTCTCC
AAAATATCTAGACGGGCACAGTTCTTGTGCTCAACATGCAAATAACAGTTTTTGCTACCT
ATCCTGAATAAAGTTCAGCCTACATCAAAGGAATCCATTATTATCAACAGTAAGGGAAAA
ACCAAAACATTTTGAGGTGTTTTGCAACTTAGAATTTCAAGTATGAAGAAATATTTGGTT
CCTGTAATTTAGTATTAAACCTGTTTACACCATTTCTTAAGAATTCCAATGTACAACTGA
TAATGCCAAGGGGACAAAAGGTAACAGCAAAGCTGGTGGATCTGATCTCAGTTTAGTTTT
CAGTGAGAACAGAAGTAGTTGTTTAGAGGTGAATAATATTACATCCTTAGCAACGTGTAC
AAGGAAAAGGCAGAGCTTTCTAGAGTAGCCAACCTCCTGAAGCATTAGGGATTTAGCTGA
AACCAGCAGAATTGAAAACTCTGGCAATAAAATACAGATTCAACTATATCCCTTCTGGCA
ATTTCCTTCTCAGAGAGGGGAGTGGGAGTAAAATGTTGCCTTCCCCACTTCTCACCACCA
CCGCCTCCATTATGACATTCCTGGCTTCTGCCAGTTTGTAGAGAGAAAGGTGGACTGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAATGAAAATTCATAAGTAAAAATGTCTCACAGTATCAATTAAGAATGTATTTCTCC
AAAATATCTAGACGGGCACAGTTCTTGTGCTCAACATGCAAATAACAGTTTTTGCTACCT
ATCCTGAATAAAGTTCAGCCTACATCAAAGGAATCCATTATTATCAACAGTAAGGGAAAA
ACCAAAACATTTTGAGGTGTTTTGCAACTTAGAATTTCAAGTATGAAGAAATATTTGGTT
CCTGTAATTTAGTATTAAACCTGTTTACACCATTTCTTAAGAATTCCAATGTACAACTGA
TAATGCCAAGGGGACAAAAGGTAACAGCAAAGCTGGTGGATCTGATCTCAGTTTAGTTTT
CAGTGAGAACAGAAGTAGTTGTTTAGAGGTGAATAATATTACATCCTTAGCAACGTGTAC
AAGGAAAAGGCAGAGCTTTCTAGAGTAGCCAACCTCCTGAAGCATTAGGGATTTAGCTGA
AACCAGCAGAATTGAAAACTCTGGCAATAAAATACAGATTCAACTATATCCCTTCTGGCA
ATTTCCTTCTCAGAGAGGGGAGTGGGAGTAAAATGTTGCCTTCCCCACTTCTCACCACCA
CCGCCTCCATTATGACATTCCTGGCTTCTGCCAGTTTGTAGAGAGAAAGGTGGACTGGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               414-660, - strand, RNAz p=0.934334

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               414-660, - strand, RNAz p=0.934334

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               470-586, - strand, RNAmicro p=0.986456

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               470-586, - strand, RNAmicro p=0.986456

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr3 (34976842-34977498)
               

               
               1-660, gnl|Hg17|chr1 (99485831-99486483)
               

               
               1-660, gnl|Mm7|chr3 (117095678-117095003)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr3 (34976842-34977498)
               

               
               1-660, gnl|Hg17|chr1 (99485831-99486483)
               

               
               1-660, gnl|Mm7|chr3 (117095678-117095003)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

	1-660, gnl\|bosTau2\|chr3 (34976842-34977498)
	1-660, gnl\|Hg17\|chr1 (99485831-99486483)
	1-660, gnl\|Mm7\|chr3 (117095678-117095003)