Ss1.1-Pig1-53D15.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCGTGGGCCAACCTCTGACTGGGCAAGGGGAGCCGGTGAGCCAGTGGCCATGCAACCCA GAGAAAACCCTGATTGGCCACGTGCCCGACCAGCGGGAGATCGTCTCTTTCGGCAGCGGC TATGGTGGCAACTCCCTGCTGGGCAAGAAGTGCTTTGCCCTTCGCATCGCCTCTCGGCTG GCCCGGGATGAGGGCTGGCTGGCGGAGCACATGCTGATCCTGGGTATCACCAACCCCGCG GGGAAGAAGCGCTATGTGGCAGCTGCCTTCCCCAGTGCCTGTGGCAAGACGAACCTGGCC ATGATGCGGCCAGCACTGCCAGGCTGGAAAGTGGAGTGTGTGGGGGATGACATCGCCTGG ATGAGGTTTGACAGTGATGGTCAACTCCGGGCCATCAACCCTGAGAATGGCTTCTTTGGG GTGGCCCCTGGCACCTCTGCCACCACCAATCCCAATGCCATGGCCACAATCCAGAGTAAC ACTCTTTTCACCAATGTGGCTGAGACGAGCGATGGCGGCGTGTACTGGGAAGGCATTGAT CAGCCTCTTCCCCCTGGCGTCACCGTGACCTCCTGGCTGGGCAAACCCTGGAAACCCGGT GACAAGGAGCCCTGTGCACATCCTAACTCTCGCTTCTGTGCCCCGGCTCGCCAGTGCCCC ATCATGGACCCAGCCTGGGAGGCCCCTGAGGGTGTCCCCATTGATGCCATCATCTTTGGA GGCCGCAGACCCAAAGGAGTCCCCCTGGTATATGAGGCCTTCAGCTGGCGCCATGGGGTG TTTGTGGGCAGTGCCATGCGCTCAGAGTCTACTGCTGCAGCCGAACACAAAGGGAAGGTC ATCATGCATGACCCATTTGCCATGCGGCCCTTCTTCGGCTACAACTTTGGGCGCTACCTG GAACACTGGCTGAGCATGGAGGGGCGCAAGGGGGCCCGGCTGCCCCGCATCTTCCATGTC AACTGGTTCCGTCGCGACGAGGCGGGCCACTTCCTGTGGCCAGGCTTTGGAGAGAACGCG CGGGTGCTAGACTGGATCTGTCGGCGGCTCGAGCAGGAGGACAGTGCCCGAGAGACGCCC ATTGGGCTGGTGCCGAAGGAAGGTGCCTTGGATCTCAGGGGCCTGGGAGCCATAGACACC ACCCAGCTGTTCTCGATCCCCAAGGACTTCTGGGAACAGGAGGTTCGTGACATTCGGAGC TACCTGACAGAGCAGGTCAACCAGGATCTGCCCAAGGAGGTGTTGGCTGAGCTGGAGGCC CTGGAGGGACGCGTGCGCAGAATGTGACCTGAGGCTCCAGGGTAGCAAGTAGCACAGAAC CCACCACCCCTCCAGCCCCTTCTCTCCCCCCGCCCCCCCGCCCCCAGGAATAAGCAAGCC ACCAGGCTTGCAGAAAATATGAGCATTATGACATAACCATTATATTCTAGGTGCCATGAG ACCAGGCCACAGACCTTCCCCCATATGGTATCCAATAATAAGAAATGCTCATTTATTTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCGTGGGCCAACCTCTGACTGGGCAAGGGGAGCCGGTGAGCCAGTGGCCATGCAACCCA GAGAAAACCCTGATTGGCCACGTGCCCGACCAGCGGGAGATCGTCTCTTTCGGCAGCGGC TATGGTGGCAACTCCCTGCTGGGCAAGAAGTGCTTTGCCCTTCGCATCGCCTCTCGGCTG GCCCGGGATGAGGGCTGGCTGGCGGAGCACATGCTGATCCTGGGTATCACCAACCCCGCG GGGAAGAAGCGCTATGTGGCAGCTGCCTTCCCCAGTGCCTGTGGCAAGACGAACCTGGCC ATGATGCGGCCAGCACTGCCAGGCTGGAAAGTGGAGTGTGTGGGGGATGACATCGCCTGG ATGAGGTTTGACAGTGATGGTCAACTCCGGGCCATCAACCCTGAGAATGGCTTCTTTGGG GTGGCCCCTGGCACCTCTGCCACCACCAATCCCAATGCCATGGCCACAATCCAGAGTAAC ACTCTTTTCACCAATGTGGCTGAGACGAGCGATGGCGGCGTGTACTGGGAAGGCATTGAT CAGCCTCTTCCCCCTGGCGTCACCGTGACCTCCTGGCTGGGCAAACCCTGGAAACCCGGT GACAAGGAGCCCTGTGCACATCCTAACTCTCGCTTCTGTGCCCCGGCTCGCCAGTGCCCC ATCATGGACCCAGCCTGGGAGGCCCCTGAGGGTGTCCCCATTGATGCCATCATCTTTGGA GGCCGCAGACCCAAAGGAGTCCCCCTGGTATATGAGGCCTTCAGCTGGCGCCATGGGGTG TTTGTGGGCAGTGCCATGCGCTCAGAGTCTACTGCTGCAGCCGAACACAAAGGGAAGGTC ATCATGCATGACCCATTTGCCATGCGGCCCTTCTTCGGCTACAACTTTGGGCGCTACCTG GAACACTGGCTGAGCATGGAGGGGCGCAAGGGGGCCCGGCTGCCCCGCATCTTCCATGTC AACTGGTTCCGTCGCGACGAGGCGGGCCACTTCCTGTGGCCAGGCTTTGGAGAGAACGCG CGGGTGCTAGACTGGATCTGTCGGCGGCTCGAGCAGGAGGACAGTGCCCGAGAGACGCCC ATTGGGCTGGTGCCGAAGGAAGGTGCCTTGGATCTCAGGGGCCTGGGAGCCATAGACACC ACCCAGCTGTTCTCGATCCCCAAGGACTTCTGGGAACAGGAGGTTCGTGACATTCGGAGC TACCTGACAGAGCAGGTCAACCAGGATCTGCCCAAGGAGGTGTTGGCTGAGCTGGAGGCC CTGGAGGGACGCGTGCGCAGAATGTGACCTGAGGCTCCAGGGTAGCAAGTAGCACAGAAC CCACCACCCCTCCAGCCCCTTCTCTCCCCCCGCCCCCCCGCCCCCAGGAATAAGCAAGCC ACCAGGCTTGCAGAAAATATGAGCATTATGACATAACCATTATATTCTAGGTGCCATGAG ACCAGGCCACAGACCTTCCCCCATATGGTATCCAATAATAAGAAATGCTCATTTATTTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 379-497, + strand, RNAz p=0.991421 | |
| 379-497, - strand, RNAz p=0.991421 | |
| 379-476, + strand, RNAz p=0.700473 | |
| 379-476, - strand, RNAz p=0.700473 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 379-497, + strand, RNAz p=0.991421 | |
| 379-497, - strand, RNAz p=0.991421 | |
| 379-476, + strand, RNAz p=0.700473 | |
| 379-476, - strand, RNAz p=0.700473 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 27-216, gnl|bosTau2|chr10 (12399010-12398821) | |
| 27-216, gnl|canFam2|chr8 (7108328-7108460) | |
| 27-216, gnl|danRer3|chrNA (52534688-52534808) | |
| 27-216, gnl|dasNov1|scaffold_29620 (3248-3379) | |
| 27-216, gnl|echTel1|scaffold_308455 (43118-43249) | |
| 27-216, gnl|fr1|chrUn (245096372-245096238) | |
| 27-216, gnl|galGal2|chr20 (11075584-11075450) | |
| 27-216, gnl|hg17|chr14 (23638086-23638217) | |
| 27-216, gnl|Hg17|chr14 (23638096-23638285) | |
| 27-216, gnl|loxAfr1|scaffold_15506 (47021-47122) | |
| 27-216, gnl|mm7|chr14 (50411255-50411386) | |
| 27-216, gnl|Mm7|chr14 (50411265-50411454) | |
| 27-216, gnl|monDom2|scaffold_12 (25664616-25664486) | |
| 27-216, gnl|oryCun1|scaffold_204481 (9038-9169) | |
| 27-216, gnl|panTro1|chr15 (22540049-22540180) | |
| 27-216, gnl|rheMac2|chr7 (86988730-86988861) | |
| 27-216, gnl|rn3|chr15 (33691295-33691426) | |
| 27-216, gnl|tetNig1|chrUn_random (5711336-5711215) | |
| 27-216, gnl|xenTro1|scaffold_53 (369198-369334) | |
| 379-600, gnl|bosTau2|chr10 (12398079-12397858) | |
| 379-600, gnl|canFam2|chr8 (7109248-7109512) | |
| 379-600, gnl|danRer3|chrNA (52535646-52535887) | |
| 379-600, gnl|dasNov1|scaffold_29620 (4133-4397) | |
| 379-600, gnl|echTel1|scaffold_308455 (44019-44287) | |
| 379-600, gnl|fr1|chrUn (245095804-245095548) | |
| 379-600, gnl|galGal2|chr20 (11074188-11073930) | |
| 379-600, gnl|hg17|chr14 (23639008-23639270) | |
| 379-600, gnl|Hg17|chr14 (23639043-23639264) | |
| 379-600, gnl|loxAfr1|scaffold_143203 (1102-838) | |
| 379-600, gnl|mm7|chr14 (50412047-50412305) | |
| 379-600, gnl|Mm7|chr14 (50412078-50412299) | |
| 379-600, gnl|monDom2|scaffold_12 (25663673-25663396) | |
| 379-600, gnl|oryCun1|scaffold_204481 (10239-10502) | |
| 379-600, gnl|panTro1|chr15 (22540970-22541232) | |
| 379-600, gnl|rheMac2|chr7 (86989650-86989912) | |
| 379-600, gnl|rn3|chr15 (33692103-33692348) | |
| 379-600, gnl|tetNig1|chrUn_random (5710821-5710577) | |
| 379-600, gnl|xenTro1|scaffold_53 (370068-370322) | |
| 831-1496, gnl|bosTau2|chr10 (12395245-12394603) | |
| 831-1496, gnl|Hg17|chr14 (23642557-23643175) | |
| 831-1496, gnl|Mm7|chr14 (50415175-50415788) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 27-216, gnl|bosTau2|chr10 (12399010-12398821) | |
| 27-216, gnl|canFam2|chr8 (7108328-7108460) | |
| 27-216, gnl|danRer3|chrNA (52534688-52534808) | |
| 27-216, gnl|dasNov1|scaffold_29620 (3248-3379) | |
| 27-216, gnl|echTel1|scaffold_308455 (43118-43249) | |
| 27-216, gnl|fr1|chrUn (245096372-245096238) | |
| 27-216, gnl|galGal2|chr20 (11075584-11075450) | |
| 27-216, gnl|hg17|chr14 (23638086-23638217) | |
| 27-216, gnl|Hg17|chr14 (23638096-23638285) | |
| 27-216, gnl|loxAfr1|scaffold_15506 (47021-47122) | |
| 27-216, gnl|mm7|chr14 (50411255-50411386) | |
| 27-216, gnl|Mm7|chr14 (50411265-50411454) | |
| 27-216, gnl|monDom2|scaffold_12 (25664616-25664486) | |
| 27-216, gnl|oryCun1|scaffold_204481 (9038-9169) | |
| 27-216, gnl|panTro1|chr15 (22540049-22540180) | |
| 27-216, gnl|rheMac2|chr7 (86988730-86988861) | |
| 27-216, gnl|rn3|chr15 (33691295-33691426) | |
| 27-216, gnl|tetNig1|chrUn_random (5711336-5711215) | |
| 27-216, gnl|xenTro1|scaffold_53 (369198-369334) | |
| 379-600, gnl|bosTau2|chr10 (12398079-12397858) | |
| 379-600, gnl|canFam2|chr8 (7109248-7109512) | |
| 379-600, gnl|danRer3|chrNA (52535646-52535887) | |
| 379-600, gnl|dasNov1|scaffold_29620 (4133-4397) | |
| 379-600, gnl|echTel1|scaffold_308455 (44019-44287) | |
| 379-600, gnl|fr1|chrUn (245095804-245095548) | |
| 379-600, gnl|galGal2|chr20 (11074188-11073930) | |
| 379-600, gnl|hg17|chr14 (23639008-23639270) | |
| 379-600, gnl|Hg17|chr14 (23639043-23639264) | |
| 379-600, gnl|loxAfr1|scaffold_143203 (1102-838) | |
| 379-600, gnl|mm7|chr14 (50412047-50412305) | |
| 379-600, gnl|Mm7|chr14 (50412078-50412299) | |
| 379-600, gnl|monDom2|scaffold_12 (25663673-25663396) | |
| 379-600, gnl|oryCun1|scaffold_204481 (10239-10502) | |
| 379-600, gnl|panTro1|chr15 (22540970-22541232) | |
| 379-600, gnl|rheMac2|chr7 (86989650-86989912) | |
| 379-600, gnl|rn3|chr15 (33692103-33692348) | |
| 379-600, gnl|tetNig1|chrUn_random (5710821-5710577) | |
| 379-600, gnl|xenTro1|scaffold_53 (370068-370322) | |
| 831-1496, gnl|bosTau2|chr10 (12395245-12394603) | |
| 831-1496, gnl|Hg17|chr14 (23642557-23643175) | |
| 831-1496, gnl|Mm7|chr14 (50415175-50415788) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cli (1.06968) | |
| nje (0.33184) | |
| jej (0.296765) | |
| fli (0.202881) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| jca (0.11396) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (1.06968) | |
| nje (0.33184) | |
| jej (0.296765) | |
| fli (0.202881) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| jca (0.11396) |