Non-Coding RNA Search

Ss1.1-Pig1-53D18.5

Sequence:


               
               GTGTTCCACCCCCTCACCCGGCTGTTGTTTACATCCAGCCTGCCTGAGAATTTCCTCTGG
GAGGAATCTGTTCCTGCTGTGGTCTGGTGCCTGGAAGGGAGAGAACTTGCTGAGGCCAGG
CTTTGAAACAGGCCAGATGAGCATCGGGTATGAGAGGCCATGCTGTCTCCCCATATTCTG
AGTGGAGCCATAAGCAAGTCTCCTGACCTTTGGGAAGTTGGCCTGTAATTCCTCTCCTGG
ACCGCCCCCTCGGAACTGCCACTGTCGGCCTTCTCTGCCCCCCGGCTACCTTCCCAGAGT
AGCTGCTGCTCTGAGATCCTCCTTTCTAAAGCACTTTCTAAAGCCCTCAGCATGGCAGGG
AGCTAACAGCACAAAAAGAATCTGGGAGTAAGTGTACGAATCCAGTGGTAAAAGCAGGTC
TAGGACCTCCCAGGCTGCTATTCCACTTGGCTTCATATCTTTTTGGGATTTGGGTTCCCT
TCCTGAGAACCAGAGTTCTGGCTCCAACATTGAGCAGTCATGTACTAATTCAGAGAAACC
ACCAATGTGTTGCCATGTATAGTTGTAGTTTTTGGGGGTTTTTTTTTGTTTTTTTTTTTC
CTTTTTAGGGATACACCGGTGGCATGTGGAAGTTCCTGGGCTAGGGGTTGAATCGGAGCT
GCAGCTGCTGGCCTATACCACAGCCCCAGCAACGTGGGATCCGAGCTGGGTCTGCAACCT
ACGCTGCAGCTTGCTGCAACGCTGGATCATTAACCCACTGAGCAAGGCCAGGGATTGAAC
CCACATCCTCATCAATACTAGTCAGGTTCATTTCCACTGAGCCACAATGGGAACTCCCAA
TATAGTTATAGATTCTTAAGAGATCAGGGGCTGGGTCATCTCTGATCACTAGATGAATAG
TTCAGCCTGAGGCATTTAGTGTTTTCCACAGTGATAAACTCCAGAGGAGCAGGAGCTGGA
AGCTGATGGCAAATTGAAGTTATTAAAAATTGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTTCCACCCCCTCACCCGGCTGTTGTTTACATCCAGCCTGCCTGAGAATTTCCTCTGG
GAGGAATCTGTTCCTGCTGTGGTCTGGTGCCTGGAAGGGAGAGAACTTGCTGAGGCCAGG
CTTTGAAACAGGCCAGATGAGCATCGGGTATGAGAGGCCATGCTGTCTCCCCATATTCTG
AGTGGAGCCATAAGCAAGTCTCCTGACCTTTGGGAAGTTGGCCTGTAATTCCTCTCCTGG
ACCGCCCCCTCGGAACTGCCACTGTCGGCCTTCTCTGCCCCCCGGCTACCTTCCCAGAGT
AGCTGCTGCTCTGAGATCCTCCTTTCTAAAGCACTTTCTAAAGCCCTCAGCATGGCAGGG
AGCTAACAGCACAAAAAGAATCTGGGAGTAAGTGTACGAATCCAGTGGTAAAAGCAGGTC
TAGGACCTCCCAGGCTGCTATTCCACTTGGCTTCATATCTTTTTGGGATTTGGGTTCCCT
TCCTGAGAACCAGAGTTCTGGCTCCAACATTGAGCAGTCATGTACTAATTCAGAGAAACC
ACCAATGTGTTGCCATGTATAGTTGTAGTTTTTGGGGGTTTTTTTTTGTTTTTTTTTTTC
CTTTTTAGGGATACACCGGTGGCATGTGGAAGTTCCTGGGCTAGGGGTTGAATCGGAGCT
GCAGCTGCTGGCCTATACCACAGCCCCAGCAACGTGGGATCCGAGCTGGGTCTGCAACCT
ACGCTGCAGCTTGCTGCAACGCTGGATCATTAACCCACTGAGCAAGGCCAGGGATTGAAC
CCACATCCTCATCAATACTAGTCAGGTTCATTTCCACTGAGCCACAATGGGAACTCCCAA
TATAGTTATAGATTCTTAAGAGATCAGGGGCTGGGTCATCTCTGATCACTAGATGAATAG
TTCAGCCTGAGGCATTTAGTGTTTTCCACAGTGATAAACTCCAGAGGAGCAGGAGCTGGA
AGCTGATGGCAAATTGAAGTTATTAAAAATTGATTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, + strand, RNAz p=0.821299
               

               
               402-521, - strand, RNAz p=0.564109

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.821299
               

               
               402-521, - strand, RNAz p=0.564109

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-145, gnl|bosTau2|chr26 (16704651-16704506)
               

               
               1-145, gnl|Hg17|chr10 (103596068-103595914)
               

               
               1-145, gnl|Mm7|chr19 (45714955-45714807)
               


               
               205-571, gnl|bosTau2|chr26 (16704494-16704146)
               

               
               205-571, gnl|Hg17|chr10 (103595853-103595499)
               

               
               205-571, gnl|Mm7|chr19 (45714750-45714421)
               


               
               842-996, gnl|bosTau2|chr26 (16704158-16704004)
               

               
               842-996, gnl|canFam2|chr28 (17425765-17426018)
               

               
               842-996, gnl|echTel1|scaffold_311022 (47184-47421)
               

               
               842-996, gnl|hg17|chr10 (103595273-103595516)
               

               
               842-996, gnl|Hg17|chr10 (103595511-103595359)
               

               
               842-996, gnl|loxAfr1|scaffold_46418 (10364-10609)
               

               
               842-996, gnl|mm7|chr19 (45714224-45714438)
               

               
               842-996, gnl|Mm7|chr19 (45714433-45714274)
               

               
               842-996, gnl|oryCun1|scaffold_194907 (48314-48539)
               

               
               842-996, gnl|panTro1|chr8 (105351183-105351426)
               

               
               842-996, gnl|rheMac2|chr9 (101483516-101483774)
               

               
               842-996, gnl|rn3|chr1 (251294311-251294523)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-145, gnl|bosTau2|chr26 (16704651-16704506)
               

               
               1-145, gnl|Hg17|chr10 (103596068-103595914)
               

               
               1-145, gnl|Mm7|chr19 (45714955-45714807)
               


               
               205-571, gnl|bosTau2|chr26 (16704494-16704146)
               

               
               205-571, gnl|Hg17|chr10 (103595853-103595499)
               

               
               205-571, gnl|Mm7|chr19 (45714750-45714421)
               


               
               842-996, gnl|bosTau2|chr26 (16704158-16704004)
               

               
               842-996, gnl|canFam2|chr28 (17425765-17426018)
               

               
               842-996, gnl|echTel1|scaffold_311022 (47184-47421)
               

               
               842-996, gnl|hg17|chr10 (103595273-103595516)
               

               
               842-996, gnl|Hg17|chr10 (103595511-103595359)
               

               
               842-996, gnl|loxAfr1|scaffold_46418 (10364-10609)
               

               
               842-996, gnl|mm7|chr19 (45714224-45714438)
               

               
               842-996, gnl|Mm7|chr19 (45714433-45714274)
               

               
               842-996, gnl|oryCun1|scaffold_194907 (48314-48539)
               

               
               842-996, gnl|panTro1|chr8 (105351183-105351426)
               

               
               842-996, gnl|rheMac2|chr9 (101483516-101483774)
               

               
               842-996, gnl|rn3|chr1 (251294311-251294523)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-119, + strand, RNAz p=0.821299
	402-521, - strand, RNAz p=0.564109

	1-145, gnl\|bosTau2\|chr26 (16704651-16704506)
	1-145, gnl\|Hg17\|chr10 (103596068-103595914)
	1-145, gnl\|Mm7\|chr19 (45714955-45714807)

	205-571, gnl\|bosTau2\|chr26 (16704494-16704146)
	205-571, gnl\|Hg17\|chr10 (103595853-103595499)
	205-571, gnl\|Mm7\|chr19 (45714750-45714421)

	842-996, gnl\|bosTau2\|chr26 (16704158-16704004)
	842-996, gnl\|canFam2\|chr28 (17425765-17426018)
	842-996, gnl\|echTel1\|scaffold_311022 (47184-47421)
	842-996, gnl\|hg17\|chr10 (103595273-103595516)
	842-996, gnl\|Hg17\|chr10 (103595511-103595359)
	842-996, gnl\|loxAfr1\|scaffold_46418 (10364-10609)
	842-996, gnl\|mm7\|chr19 (45714224-45714438)
	842-996, gnl\|Mm7\|chr19 (45714433-45714274)
	842-996, gnl\|oryCun1\|scaffold_194907 (48314-48539)
	842-996, gnl\|panTro1\|chr8 (105351183-105351426)
	842-996, gnl\|rheMac2\|chr9 (101483516-101483774)
	842-996, gnl\|rn3\|chr1 (251294311-251294523)