Non-Coding RNA Search

Ss1.1-Pig1-53H11.5

Sequence:


               
               ATGCCACGGGTGTAGCCCTAGAAAAGAAAAAAAGACCAAAAAAAAAAAAAAAGAATCAGG
CGCTAGTGAAACACTCACTGTTTGAATTCATTCAAGTATTTATTGAGTGCCTACTGTGTG
CTGAGCACCATTCCATGCTCTGGGAATAGTGAGATAAACTATCATTTATTCAAACACAAA
GAGCACCTACTGCGTGCCTGGTACTTGCCACACGAATGTTCTTATTGTCTTGGTGCGTTT
ATTGAGTGCCTGCTGTGTGCCGGGAGCTGAGCCTGGTGCTGGGGCCGAAGATGAACAAGG
TGCTTTTCACTCTTTAATTGGTTTCTTCCCCACACATCTGAAGAGTTGTTCAGTCAGCAT
TTGATCACCCACAGAGATGAACAAGATGAGTCCTTTCATTTCTTCATGCAGCAAGCATGT
ATTGAGTGCCTACTGTGTGCCTGACCTCATGGACTCCTAGTGGGGTTGACTGAGTTGGAT
CCCCCCCCCCATCACCCAGGCTGTGTGCAGACATCTCTTGCCACTGCCTGGGAGCAGGGG
TGTCTCTTCCCTCACCAGAGGCAGCCACAGGTTCCAGTGACCACATGTCCTCACGTGAGT
CCTCCTAGACCCAGCCCCCCTGGAGGGGGCGAGGGGCGAAGCTGGGGGCGGGGTCTCCCA
TGCCCACCCCTGGTCTCGGTTGCTTGACCGCCCTGCCCTGCATCTCAGGTGTGGTCTCTG
CCTGCTTGATGGCGTTCCTCTGTCCAAGCCTTTGGTGGGATCACGTATGTGGGGGCTTAT
TCTGGCTCAGCTGCACTGGGGTGCCACCCACAACCTGGGCAGGACGTGCCCCAACACAGG
CTGGAGGACTCGCTGCACCTTCAGCCTGAAACGAATGTCAGAGCCGGCCAGCAGTGCCCC
ATTCTGGCAGGGATGACTGCTGTCCAGCTCGGCTCCTGGATAACTTGCTTATTTTTGTAT
TAAAAGTTCCTGGTTGGTTTTCATGTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCCACGGGTGTAGCCCTAGAAAAGAAAAAAAGACCAAAAAAAAAAAAAAAGAATCAGG
CGCTAGTGAAACACTCACTGTTTGAATTCATTCAAGTATTTATTGAGTGCCTACTGTGTG
CTGAGCACCATTCCATGCTCTGGGAATAGTGAGATAAACTATCATTTATTCAAACACAAA
GAGCACCTACTGCGTGCCTGGTACTTGCCACACGAATGTTCTTATTGTCTTGGTGCGTTT
ATTGAGTGCCTGCTGTGTGCCGGGAGCTGAGCCTGGTGCTGGGGCCGAAGATGAACAAGG
TGCTTTTCACTCTTTAATTGGTTTCTTCCCCACACATCTGAAGAGTTGTTCAGTCAGCAT
TTGATCACCCACAGAGATGAACAAGATGAGTCCTTTCATTTCTTCATGCAGCAAGCATGT
ATTGAGTGCCTACTGTGTGCCTGACCTCATGGACTCCTAGTGGGGTTGACTGAGTTGGAT
CCCCCCCCCCATCACCCAGGCTGTGTGCAGACATCTCTTGCCACTGCCTGGGAGCAGGGG
TGTCTCTTCCCTCACCAGAGGCAGCCACAGGTTCCAGTGACCACATGTCCTCACGTGAGT
CCTCCTAGACCCAGCCCCCCTGGAGGGGGCGAGGGGCGAAGCTGGGGGCGGGGTCTCCCA
TGCCCACCCCTGGTCTCGGTTGCTTGACCGCCCTGCCCTGCATCTCAGGTGTGGTCTCTG
CCTGCTTGATGGCGTTCCTCTGTCCAAGCCTTTGGTGGGATCACGTATGTGGGGGCTTAT
TCTGGCTCAGCTGCACTGGGGTGCCACCCACAACCTGGGCAGGACGTGCCCCAACACAGG
CTGGAGGACTCGCTGCACCTTCAGCCTGAAACGAATGTCAGAGCCGGCCAGCAGTGCCCC
ATTCTGGCAGGGATGACTGCTGTCCAGCTCGGCTCCTGGATAACTTGCTTATTTTTGTAT
TAAAAGTTCCTGGTTGGTTTTCATGTAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               51-345, gnl|bosTau2|chr7 (4824164-4823868)
               

               
               51-345, gnl|Mm7|chr8 (70091248-70091512)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-345, gnl|bosTau2|chr7 (4824164-4823868)
               

               
               51-345, gnl|Mm7|chr8 (70091248-70091512)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               amn (0.417711)
               

               
               cly (0.361925)
               

               
               fhi (0.339155)
               

               
               csp (0.322373)
               

               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cly (0.361925)
               

               
               fhi (0.339155)
               

               
               csp (0.322373)
               

               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	51-345, gnl\|bosTau2\|chr7 (4824164-4823868)
	51-345, gnl\|Mm7\|chr8 (70091248-70091512)

	amn (0.417711)
	cly (0.361925)
	fhi (0.339155)
	csp (0.322373)
	nca (0.273748)
	ese (0.253004)
	fli (0.202881)
	fcc (0.197785)
	eje (0.197668)
	nep (0.183925)
	ill (0.175593)
	cli (0.152812)
	cag (0.151194)
	lnt (0.142308)
	nmm (0.132802)
	eru (0.120048)
	ecc (0.115035)