Non-Coding RNA Search

Ss1.1-Pig1-53P11.5

Sequence:


               
               CCTGCTTCCTGAAAATGCCCTCTTTACATCTATTCAGTCCTTACAGTCTGAGTCCGAGCC
ACTGAGCCTTATTGCAAATGTGGTAGCTGGCTCATCCTGCCGGGGCCCCCCATTGCCCAG
AGACCTGCAGGGCTCCAGGCACAGGGCTGAAGTTGCCTCCGCCCTCCGCTCCTTCTCCCC
TTTGCAACCTGGTCAGGCTCCCTCGGGCCGGGCTCCCAGCACCATGACAGGCTCTGGGGT
GGATGCCAGGACAGCCAGCTCCGGGAGCAGCGTGTGGGAAGGACAGCTGCAGAGCCTGGT
GCTGTCGGAATATGCATCCACCGAGATGAGCCTGCATGCCCTCTATATGCACCAGCTCCA
CAAGCAGCAGGCGCAGGCTGAACCAGAGCGGCACGTGTGGCACCGCCGGGAGAGTGATGA
GAGTGGGGAGAGTGCCCCTGAAGAGGGGGGAGAGGGCGCCCGGGCCCCCCAGCCTATCCC
CCGCTCTGCCAGCTATCCCTGTGCCACACCTCGGCCTGGAGCACCTGAGACCACCGCCCT
GCAGGGGGGCTTCCAGAGGCGCTACGGAGGCATCACAGACCCTGGCACAGTGCCCCGGGC
CCCCTCTCACTTCTCTCGGCTGCCCCTTGGAGGATGGGCTGAAGACGGGCAGTCAGCATC
AAGGCACCCAGAGCCCGTGCCCGAAGAGGGCTCCGAGGATGAGCTTCCACCTCAGGTGCA
CAAGGTATAGACAAGGCTGAAGGGGGTCCCTATGCCCCAGGATGGAGGTCACCGTTGCCC
TGCCATCCCATCTGCCCGCCATGGAGGGCTCCTCAGAGTGTTGCCTGGCTCCACGCGTGT
GGTGTTTGTGTGTCCGTGCCTGGCCAAGGGAGGTGCCAACACTGGGCTCGCCGAGAGATT
GGGGGCCTAGGAATCAGGGCGCACAGGACTCTAGCCTCATCCCCAGGACCCCCCTTGGCT
CAGAGTGTGGTGCTAGAAACTGGTCCCCAGCCCAGCCCCAGTACTGCCACCTTTGCACCC
ACCCTTGCAGATCTCCAGAGGACTGCCCACCACAGAAGCTGCCAAGCAGGGAGAACACGT
GCCAACTGTGGAGTGGGGAGGAGGTTGGGCCTGGACCCTCGACCTCTATAGCCTCTCTTC
CCCTACCCTGAACAGACGAGCAGCTCAGGCTGTGGCCCTTACCTCACCCCCAGTTCTCTC
CCAGTGCTGCAGCCTGCTCACCTCTCCCCTGCTTCCCGCACATCACTGGCATGTGTGCCG
CTTGTTCCTGCTTGTTCTCGTTCTGTTGGCTCGCTCCCCTTCTGTTAAGCTTTTGCTTTG
CGTTGGTGTGGAGGCTCTCACTCCCAGCTCCCGTCACGCTATCTTTTGACACTAAGAAGG
AAGGTTTACGAAATTGCAGGAGCGGGATGGAAATTCTTTGCTGCCCTCTCCAATGTTAGG
ATGGACCCCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCTTCCTGAAAATGCCCTCTTTACATCTATTCAGTCCTTACAGTCTGAGTCCGAGCC
ACTGAGCCTTATTGCAAATGTGGTAGCTGGCTCATCCTGCCGGGGCCCCCCATTGCCCAG
AGACCTGCAGGGCTCCAGGCACAGGGCTGAAGTTGCCTCCGCCCTCCGCTCCTTCTCCCC
TTTGCAACCTGGTCAGGCTCCCTCGGGCCGGGCTCCCAGCACCATGACAGGCTCTGGGGT
GGATGCCAGGACAGCCAGCTCCGGGAGCAGCGTGTGGGAAGGACAGCTGCAGAGCCTGGT
GCTGTCGGAATATGCATCCACCGAGATGAGCCTGCATGCCCTCTATATGCACCAGCTCCA
CAAGCAGCAGGCGCAGGCTGAACCAGAGCGGCACGTGTGGCACCGCCGGGAGAGTGATGA
GAGTGGGGAGAGTGCCCCTGAAGAGGGGGGAGAGGGCGCCCGGGCCCCCCAGCCTATCCC
CCGCTCTGCCAGCTATCCCTGTGCCACACCTCGGCCTGGAGCACCTGAGACCACCGCCCT
GCAGGGGGGCTTCCAGAGGCGCTACGGAGGCATCACAGACCCTGGCACAGTGCCCCGGGC
CCCCTCTCACTTCTCTCGGCTGCCCCTTGGAGGATGGGCTGAAGACGGGCAGTCAGCATC
AAGGCACCCAGAGCCCGTGCCCGAAGAGGGCTCCGAGGATGAGCTTCCACCTCAGGTGCA
CAAGGTATAGACAAGGCTGAAGGGGGTCCCTATGCCCCAGGATGGAGGTCACCGTTGCCC
TGCCATCCCATCTGCCCGCCATGGAGGGCTCCTCAGAGTGTTGCCTGGCTCCACGCGTGT
GGTGTTTGTGTGTCCGTGCCTGGCCAAGGGAGGTGCCAACACTGGGCTCGCCGAGAGATT
GGGGGCCTAGGAATCAGGGCGCACAGGACTCTAGCCTCATCCCCAGGACCCCCCTTGGCT
CAGAGTGTGGTGCTAGAAACTGGTCCCCAGCCCAGCCCCAGTACTGCCACCTTTGCACCC
ACCCTTGCAGATCTCCAGAGGACTGCCCACCACAGAAGCTGCCAAGCAGGGAGAACACGT
GCCAACTGTGGAGTGGGGAGGAGGTTGGGCCTGGACCCTCGACCTCTATAGCCTCTCTTC
CCCTACCCTGAACAGACGAGCAGCTCAGGCTGTGGCCCTTACCTCACCCCCAGTTCTCTC
CCAGTGCTGCAGCCTGCTCACCTCTCCCCTGCTTCCCGCACATCACTGGCATGTGTGCCG
CTTGTTCCTGCTTGTTCTCGTTCTGTTGGCTCGCTCCCCTTCTGTTAAGCTTTTGCTTTG
CGTTGGTGTGGAGGCTCTCACTCCCAGCTCCCGTCACGCTATCTTTTGACACTAAGAAGG
AAGGTTTACGAAATTGCAGGAGCGGGATGGAAATTCTTTGCTGCCCTCTCCAATGTTAGG
ATGGACCCCTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14042131|dbj|BAB55119.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14042131|dbj|BAB55119.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               57-238, - strand, RNAz p=0.826438
               

               
               858-964, - strand, RNAz p=0.998335
               

               
               1153-1266, - strand, RNAz p=0.668331

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               57-238, - strand, RNAz p=0.826438
               

               
               858-964, - strand, RNAz p=0.998335
               

               
               1153-1266, - strand, RNAz p=0.668331

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               57-238, gnl|bosTau2|chr2 (65165527-65165346)
               

               
               57-238, gnl|Hg17|chr2 (219912679-219912498)
               

               
               57-238, gnl|Mm7|chr1 (75408121-75407932)
               


               
               353-578, gnl|bosTau2|chr2 (65164410-65164185)
               

               
               353-578, gnl|Hg17|chr2 (219911533-219911307)
               

               
               353-578, gnl|Mm7|chr1 (75406372-75406146)
               


               
               739-1452, gnl|bosTau2|chr2 (65163485-65162770)
               

               
               739-1452, gnl|Hg17|chr2 (219910665-219909952)
               

               
               739-1452, gnl|Mm7|chr1 (75405133-75404463)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-238, gnl|bosTau2|chr2 (65165527-65165346)
               

               
               57-238, gnl|Hg17|chr2 (219912679-219912498)
               

               
               57-238, gnl|Mm7|chr1 (75408121-75407932)
               


               
               353-578, gnl|bosTau2|chr2 (65164410-65164185)
               

               
               353-578, gnl|Hg17|chr2 (219911533-219911307)
               

               
               353-578, gnl|Mm7|chr1 (75406372-75406146)
               


               
               739-1452, gnl|bosTau2|chr2 (65163485-65162770)
               

               
               739-1452, gnl|Hg17|chr2 (219910665-219909952)
               

               
               739-1452, gnl|Mm7|chr1 (75405133-75404463)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	57-238, - strand, RNAz p=0.826438
	858-964, - strand, RNAz p=0.998335
	1153-1266, - strand, RNAz p=0.668331

	57-238, gnl\|bosTau2\|chr2 (65165527-65165346)
	57-238, gnl\|Hg17\|chr2 (219912679-219912498)
	57-238, gnl\|Mm7\|chr1 (75408121-75407932)

	353-578, gnl\|bosTau2\|chr2 (65164410-65164185)
	353-578, gnl\|Hg17\|chr2 (219911533-219911307)
	353-578, gnl\|Mm7\|chr1 (75406372-75406146)

	739-1452, gnl\|bosTau2\|chr2 (65163485-65162770)
	739-1452, gnl\|Hg17\|chr2 (219910665-219909952)
	739-1452, gnl\|Mm7\|chr1 (75405133-75404463)