Non-Coding RNA Search

Ss1.1-Pig1-54A20.5

Sequence:


               
               TAGGTTCATTATAGACGCATGTTTCGCAGTGATCCAGGGAGGTCAGAAAGCATGGTTTCC
CCTCACTGCTTATGCTCCTGTAAGTATCTGCCACCTGCACACTTGGTAGGGGGTGCCTTG
AAGTGGATGCCCGTGGTGTTCTGATGCTGACTGGCCTGGAGGCAGGGAGGCTTCACTGAG
GACCTGAAAGTTGGATCCTGAAGGATGCCTAGGTGTTGACTTGCCACAGGAGCCTGAGCT
GCCTCCTCTCAGTCCCGGTCCGCCGCCCGTGCGCCTTCGGGAGCCTACCTTGTGAGCGCG
ATCCGCGCCCACTGGCTCCGTTCAGCCGTCGCTGTCCGGCCGAGCCCCAGCTCCGGAGCT
GCCGCTGCTGCTGCTGGGACATGGTCCTCTGCGTTCAGGGACCTTGTCCTTTGCTGGCTG
TGGAGCAGACTGGGCAGCGGCCCCTGTGGGCCCAGTCCCTGGAGCTGCCCGAACTAGCTA
TGCAGCCTTTGCCTGTTGGGGCCTTCCTGGAGGAGGCAGCAGAGGAGTCCCCAGCCCATC
CAGAGAGTGAGCCTAAGGTGCTGGACCCCGAGGAAGATCTACTGTGCATAGCCAAGACCT
TCTCCTACCTTCGGGAATCTGGCTGGTATTGGGGTTCCATTACGGCCAGCGAGGCCCGGC
AACACCTGCAGAAGATGCCAGAGGGCACATTCCTAGTACGTGACAGCACCCACCCCAGCT
ACCTGTTCACACTGTCGGTCAAAACCACCCGCGGCCCCACCAACGTGCGCATTGAGTACG
CCGACTCCAGCTTCCGCCTGGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGTTCATTATAGACGCATGTTTCGCAGTGATCCAGGGAGGTCAGAAAGCATGGTTTCC
CCTCACTGCTTATGCTCCTGTAAGTATCTGCCACCTGCACACTTGGTAGGGGGTGCCTTG
AAGTGGATGCCCGTGGTGTTCTGATGCTGACTGGCCTGGAGGCAGGGAGGCTTCACTGAG
GACCTGAAAGTTGGATCCTGAAGGATGCCTAGGTGTTGACTTGCCACAGGAGCCTGAGCT
GCCTCCTCTCAGTCCCGGTCCGCCGCCCGTGCGCCTTCGGGAGCCTACCTTGTGAGCGCG
ATCCGCGCCCACTGGCTCCGTTCAGCCGTCGCTGTCCGGCCGAGCCCCAGCTCCGGAGCT
GCCGCTGCTGCTGCTGGGACATGGTCCTCTGCGTTCAGGGACCTTGTCCTTTGCTGGCTG
TGGAGCAGACTGGGCAGCGGCCCCTGTGGGCCCAGTCCCTGGAGCTGCCCGAACTAGCTA
TGCAGCCTTTGCCTGTTGGGGCCTTCCTGGAGGAGGCAGCAGAGGAGTCCCCAGCCCATC
CAGAGAGTGAGCCTAAGGTGCTGGACCCCGAGGAAGATCTACTGTGCATAGCCAAGACCT
TCTCCTACCTTCGGGAATCTGGCTGGTATTGGGGTTCCATTACGGCCAGCGAGGCCCGGC
AACACCTGCAGAAGATGCCAGAGGGCACATTCCTAGTACGTGACAGCACCCACCCCAGCT
ACCTGTTCACACTGTCGGTCAAAACCACCCGCGGCCCCACCAACGTGCGCATTGAGTACG
CCGACTCCAGCTTCCGCCTGGACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|11095277|gb|AAG29815.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|11095277|gb|AAG29815.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               400-518, + strand, RNAz p=0.59858

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-518, + strand, RNAz p=0.59858

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               106-238, gnl|bosTau2|chr22 (38878154-38878024)
               

               
               106-238, gnl|Hg17|chr3 (50626451-50626328)
               


               
               400-622, gnl|bosTau2|chr22 (38869286-38869064)
               

               
               400-622, gnl|canFam2|chr20 (41763600-41763350)
               

               
               400-622, gnl|dasNov1|scaffold_123160 (1398-1145)
               

               
               400-622, gnl|echTel1|scaffold_310647 (3861-3602)
               

               
               400-622, gnl|galGal2|chr12 (1651684-1651919)
               

               
               400-622, gnl|hg17|chr3 (50620806-50621056)
               

               
               400-622, gnl|Hg17|chr3 (50621029-50620807)
               

               
               400-622, gnl|mm7|chr9 (107029596-107029351)
               

               
               400-622, gnl|Mm7|chr9 (107029371-107029593)
               

               
               400-622, gnl|monDom2|scaffold_5 (73034467-73034220)
               

               
               400-622, gnl|panTro1|chr2 (52200892-52201142)
               

               
               400-622, gnl|rheMac2|chr2 (85805810-85805560)
               

               
               400-622, gnl|rn3|chr8 (112563717-112563472)
               

               
               400-622, gnl|xenTro1|scaffold_189 (1254901-1254619)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-238, gnl|bosTau2|chr22 (38878154-38878024)
               

               
               106-238, gnl|Hg17|chr3 (50626451-50626328)
               


               
               400-622, gnl|bosTau2|chr22 (38869286-38869064)
               

               
               400-622, gnl|canFam2|chr20 (41763600-41763350)
               

               
               400-622, gnl|dasNov1|scaffold_123160 (1398-1145)
               

               
               400-622, gnl|echTel1|scaffold_310647 (3861-3602)
               

               
               400-622, gnl|galGal2|chr12 (1651684-1651919)
               

               
               400-622, gnl|hg17|chr3 (50620806-50621056)
               

               
               400-622, gnl|Hg17|chr3 (50621029-50620807)
               

               
               400-622, gnl|mm7|chr9 (107029596-107029351)
               

               
               400-622, gnl|Mm7|chr9 (107029371-107029593)
               

               
               400-622, gnl|monDom2|scaffold_5 (73034467-73034220)
               

               
               400-622, gnl|panTro1|chr2 (52200892-52201142)
               

               
               400-622, gnl|rheMac2|chr2 (85805810-85805560)
               

               
               400-622, gnl|rn3|chr8 (112563717-112563472)
               

               
               400-622, gnl|xenTro1|scaffold_189 (1254901-1254619)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	106-238, gnl\|bosTau2\|chr22 (38878154-38878024)
	106-238, gnl\|Hg17\|chr3 (50626451-50626328)

	400-622, gnl\|bosTau2\|chr22 (38869286-38869064)
	400-622, gnl\|canFam2\|chr20 (41763600-41763350)
	400-622, gnl\|dasNov1\|scaffold_123160 (1398-1145)
	400-622, gnl\|echTel1\|scaffold_310647 (3861-3602)
	400-622, gnl\|galGal2\|chr12 (1651684-1651919)
	400-622, gnl\|hg17\|chr3 (50620806-50621056)
	400-622, gnl\|Hg17\|chr3 (50621029-50620807)
	400-622, gnl\|mm7\|chr9 (107029596-107029351)
	400-622, gnl\|Mm7\|chr9 (107029371-107029593)
	400-622, gnl\|monDom2\|scaffold_5 (73034467-73034220)
	400-622, gnl\|panTro1\|chr2 (52200892-52201142)
	400-622, gnl\|rheMac2\|chr2 (85805810-85805560)
	400-622, gnl\|rn3\|chr8 (112563717-112563472)
	400-622, gnl\|xenTro1\|scaffold_189 (1254901-1254619)