Non-Coding RNA Search

Ss1.1-Pig1-54E01.5

Sequence:


               
               GGGCAGCCGTGAAAGCTCCACATCCCCCGGCTCAAAACCCGAGCGAGGGTGTGCGCCCGG
GAGACTTGCTCGGAGCCGTCTACCCCTCACTGCACCCCCAAGCCAGCATGGATTCGCCTG
CGTTGGACCACCAGCCAACAGCAATGATGCAAGCTTGGCCTCTGTCTCTGCTGCCCTCGC
CACAGCTGCCCCTGCTGCTGCCGTCCCCACAGGATCCCCAGCCTGCCCCAGGGCCTGCCA
GGCACCCGAGGCCTCTGCGCCTGGAGTCTAGAGCTGGCATGCAGCCCACCAAGGAGCCCA
CCAACCTGTGAGCCCTGTGCCCACACGCCAACGGCTGCCCGCATCCCCTCCCCACCCATC
CCCCGGTGGTGGGGACTGTGCCGAGCCTGACCTGGGATTTAGGGGGCGGACTCGTCTTGA
TCCTGTGGCCATATAAATACACACATCCCAGTGCTGCTTGTGCTGCATCTCGTGGAGAAC
ACAGCTTTCTGGCTTGAATTTTCCACTAAGCCAAGTGAATTCCTGAGCAGTTTTCAATAC
AACACAGTTAAAATGGTTTTAAAAACAATCACTTTCCTTTTAATTTTGCTGAAATGACTT
CATCAGAATCAGTTCCAATTACAGCTAATGCTGCTGTCCTTTTGCCTTGGGGACTGTAAT
TTCTATCAGGACCAGTTTTCGCACGGGAACCAGCCTTCCTCCGTGCTTGCTTACATATTT
TGTGCTGATTGTTTCCACGAGTGACGGCTGCTGTGAACTGGGTATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAGCCGTGAAAGCTCCACATCCCCCGGCTCAAAACCCGAGCGAGGGTGTGCGCCCGG
GAGACTTGCTCGGAGCCGTCTACCCCTCACTGCACCCCCAAGCCAGCATGGATTCGCCTG
CGTTGGACCACCAGCCAACAGCAATGATGCAAGCTTGGCCTCTGTCTCTGCTGCCCTCGC
CACAGCTGCCCCTGCTGCTGCCGTCCCCACAGGATCCCCAGCCTGCCCCAGGGCCTGCCA
GGCACCCGAGGCCTCTGCGCCTGGAGTCTAGAGCTGGCATGCAGCCCACCAAGGAGCCCA
CCAACCTGTGAGCCCTGTGCCCACACGCCAACGGCTGCCCGCATCCCCTCCCCACCCATC
CCCCGGTGGTGGGGACTGTGCCGAGCCTGACCTGGGATTTAGGGGGCGGACTCGTCTTGA
TCCTGTGGCCATATAAATACACACATCCCAGTGCTGCTTGTGCTGCATCTCGTGGAGAAC
ACAGCTTTCTGGCTTGAATTTTCCACTAAGCCAAGTGAATTCCTGAGCAGTTTTCAATAC
AACACAGTTAAAATGGTTTTAAAAACAATCACTTTCCTTTTAATTTTGCTGAAATGACTT
CATCAGAATCAGTTCCAATTACAGCTAATGCTGCTGTCCTTTTGCCTTGGGGACTGTAAT
TTCTATCAGGACCAGTTTTCGCACGGGAACCAGCCTTCCTCCGTGCTTGCTTACATATTT
TGTGCTGATTGTTTCCACGAGTGACGGCTGCTGTGAACTGGGTATTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               208-315, - strand, RNAz p=0.616785

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               208-315, - strand, RNAz p=0.616785

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               90-357, gnl|bosTau2|chr25 (4559878-4560148)
               

               
               90-357, gnl|Hg17|chr16 (4590104-4590497)
               

               
               90-357, gnl|Mm7|chr16 (4540518-4540750)
               


               
               432-768, gnl|bosTau2|chr25 (4560253-4560596)
               

               
               432-768, gnl|Hg17|chr16 (4590691-4591332)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-357, gnl|bosTau2|chr25 (4559878-4560148)
               

               
               90-357, gnl|Hg17|chr16 (4590104-4590497)
               

               
               90-357, gnl|Mm7|chr16 (4540518-4540750)
               


               
               432-768, gnl|bosTau2|chr25 (4560253-4560596)
               

               
               432-768, gnl|Hg17|chr16 (4590691-4591332)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	90-357, gnl\|bosTau2\|chr25 (4559878-4560148)
	90-357, gnl\|Hg17\|chr16 (4590104-4590497)
	90-357, gnl\|Mm7\|chr16 (4540518-4540750)

	432-768, gnl\|bosTau2\|chr25 (4560253-4560596)
	432-768, gnl\|Hg17\|chr16 (4590691-4591332)