Non-Coding RNA Search

Ss1.1-Pig1-54N04.5

Sequence:


               
               CTCATCCGCTCAGGCCACCTACAACAGCACACCTAAGCCCAGTGCCCCCCAGCAGGGAGC
TTCAGGGGGGCAGGGAGCCCCTGCCCCCACTCCGGCTTCCACCTGCCAGGAGCCCCTTCC
TGTAGCTGAACCAGCAACCGCCCCGGCTCCCCGGCCGCTCGGCTCCATCCAGAGACCAAA
CAGCTTCCTCTTCCGTTCTTCTTCTCAGAGTGGCTCAGGCCCTTCCTCACCAGACTCTGT
CCTGAGACCTCGGCGATCCCCTCAGCTGTTGGACGAAAAGGAGGTGATGGCTCAGCTGCG
CCAGGTCCTTGAGTCACGGCTGCAGCGGCCCCTGCCCGAGGACCTGGCCGAGGCTCTGGC
CAGTGGGGTCATCCTCTGTCAGCTGGCCAACCAGCTGCGGCCGCGGTCTGTGCCCTTCAT
TCACGTGCCCTCGCCTGCTGTGCCAAAACTCAGTGCCCTCAAGTCTCGGAAGAATGTGGA
GAGTTTCTTAGAAGCCTGTCGAAAAATGGGGGTGCCTGAGGTATGGGGGTGTGTTCTCAG
GAGCCCAGGGCTGGTCTCTGCTCTAAAGAGTGCCGTGTCCTGGGCTCAGCTGAGCACTCT
GCATGGACAGCGGGACTGCATTCCTGGGGGGTGTCTGCTCCCCAGAAGGAAGCACGTCCC
CCAGCCCCGAGCCTGCATGTGTCCCCTGCGTGCCCCCCTTCCCTGCACTCTGCATGTTGG
CGTGGCTCTGGCCCTGGCACGTGAGGGCAGGGGGTGGGAAGGATCGTCGTGCTGCTGCTG
CTGACGTGTGTCCTTTGTCCTTGTCCATCTGTCCTACTCTCCCTTCCCAGGCTGACCTGT
GCTCGCCCTCGGACCTCCTCCAGGGCACCGCCCAGGGGCTGTGGACCACCCTGGAGGCCG
TGAAGCGGGTGGGGGGCAGGCCTCCCCCACCCCTCTGGCCTCCCTCTGGTCTGGGCGGCT
TCATCTTCTTCTACGTCGTCCTCATGCTGCTGCTCTGTGTCGTCTACACTCGGCTCCTGG
GTTCTTAGGACCTGAAGTCACCCCTGCCCTTACCCCCTCGCCCTGTTTCTATTTATAAGA
CTCCCGTGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCCGCTCAGGCCACCTACAACAGCACACCTAAGCCCAGTGCCCCCCAGCAGGGAGC
TTCAGGGGGGCAGGGAGCCCCTGCCCCCACTCCGGCTTCCACCTGCCAGGAGCCCCTTCC
TGTAGCTGAACCAGCAACCGCCCCGGCTCCCCGGCCGCTCGGCTCCATCCAGAGACCAAA
CAGCTTCCTCTTCCGTTCTTCTTCTCAGAGTGGCTCAGGCCCTTCCTCACCAGACTCTGT
CCTGAGACCTCGGCGATCCCCTCAGCTGTTGGACGAAAAGGAGGTGATGGCTCAGCTGCG
CCAGGTCCTTGAGTCACGGCTGCAGCGGCCCCTGCCCGAGGACCTGGCCGAGGCTCTGGC
CAGTGGGGTCATCCTCTGTCAGCTGGCCAACCAGCTGCGGCCGCGGTCTGTGCCCTTCAT
TCACGTGCCCTCGCCTGCTGTGCCAAAACTCAGTGCCCTCAAGTCTCGGAAGAATGTGGA
GAGTTTCTTAGAAGCCTGTCGAAAAATGGGGGTGCCTGAGGTATGGGGGTGTGTTCTCAG
GAGCCCAGGGCTGGTCTCTGCTCTAAAGAGTGCCGTGTCCTGGGCTCAGCTGAGCACTCT
GCATGGACAGCGGGACTGCATTCCTGGGGGGTGTCTGCTCCCCAGAAGGAAGCACGTCCC
CCAGCCCCGAGCCTGCATGTGTCCCCTGCGTGCCCCCCTTCCCTGCACTCTGCATGTTGG
CGTGGCTCTGGCCCTGGCACGTGAGGGCAGGGGGTGGGAAGGATCGTCGTGCTGCTGCTG
CTGACGTGTGTCCTTTGTCCTTGTCCATCTGTCCTACTCTCCCTTCCCAGGCTGACCTGT
GCTCGCCCTCGGACCTCCTCCAGGGCACCGCCCAGGGGCTGTGGACCACCCTGGAGGCCG
TGAAGCGGGTGGGGGGCAGGCCTCCCCCACCCCTCTGGCCTCCCTCTGGTCTGGGCGGCT
TCATCTTCTTCTACGTCGTCCTCATGCTGCTGCTCTGTGTCGTCTACACTCGGCTCCTGG
GTTCTTAGGACCTGAAGTCACCCCTGCCCTTACCCCCTCGCCCTGTTTCTATTTATAAGA
CTCCCGTGGGAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61857816|ref|XP_610073.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61857816|ref|XP_610073.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               395-915, gnl|bosTau2|chr25 (32389627-32390123)
               

               
               395-915, gnl|Hg17|chr7 (99818101-99817494)
               

               
               395-915, gnl|Mm7|chr5 (136557532-136558034)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               395-915, gnl|bosTau2|chr25 (32389627-32390123)
               

               
               395-915, gnl|Hg17|chr7 (99818101-99817494)
               

               
               395-915, gnl|Mm7|chr5 (136557532-136558034)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbl (0.229595)
               

               
               cag (0.151194)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               cag (0.151194)
               

               
               pla (0.133672)

	395-915, gnl\|bosTau2\|chr25 (32389627-32390123)
	395-915, gnl\|Hg17\|chr7 (99818101-99817494)
	395-915, gnl\|Mm7\|chr5 (136557532-136558034)