Non-Coding RNA Search

Ss1.1-Pig1-54O02.5

Sequence:


               
               AAGCTGCTGTCGGAGGTCCTACCTTCCACGCTGCGGGGAGTGGGGTCTGCTGCCAGCCTG
CCGAGAGGTCCCCCTGCACTGGACACAGTCCGAGTCCTTTGCTGAGTGAGACCCCCCAGC
CCTGGGCTGGGCCCTGGCACCTGGGCAGTGTGGGCCCGGCCCAGGGCTCTTGGTTGTGTG
TGGGGCAGGGCGGGGGGACGACCCGTGTGACCCCACCCCACCCCCCAGCCTGCTTTGCTG
TAGGAACCACTAGAGCGTGATTTAAATAGCTTTATTCATTTACAAGAGGAATATATTTGG
CTTCTTAAAGACTCTGAGATTCACAATCAGCAGCTCTAAAAAATAAAGGAGCAGTTTGGC
TTCCGGAAGGAAGAGGAAGCANAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGCCTTTT
AAAATTTTCCTTGGGGGGGCCAAATTTTACCCTCCCCCTTTTTTTTTAAAAAAGGGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCTGCTGTCGGAGGTCCTACCTTCCACGCTGCGGGGAGTGGGGTCTGCTGCCAGCCTG
CCGAGAGGTCCCCCTGCACTGGACACAGTCCGAGTCCTTTGCTGAGTGAGACCCCCCAGC
CCTGGGCTGGGCCCTGGCACCTGGGCAGTGTGGGCCCGGCCCAGGGCTCTTGGTTGTGTG
TGGGGCAGGGCGGGGGGACGACCCGTGTGACCCCACCCCACCCCCCAGCCTGCTTTGCTG
TAGGAACCACTAGAGCGTGATTTAAATAGCTTTATTCATTTACAAGAGGAATATATTTGG
CTTCTTAAAGACTCTGAGATTCACAATCAGCAGCTCTAAAAAATAAAGGAGCAGTTTGGC
TTCCGGAAGGAAGAGGAAGCANAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGCCTTTT
AAAATTTTCCTTGGGGGGGCCAAATTTTACCCTCCCCCTTTTTTTTTAAAAAAGGGGGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               270-381, - strand, RNAz p=0.869673

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-381, - strand, RNAz p=0.869673

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-381, gnl|bosTau2|chr19 (19591426-19591038)
               

               
               1-381, gnl|Hg17|chr17 (4389371-4388949)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-381, gnl|bosTau2|chr19 (19591426-19591038)
               

               
               1-381, gnl|Hg17|chr17 (4389371-4388949)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ese (0.126502)

	1-381, gnl\|bosTau2\|chr19 (19591426-19591038)
	1-381, gnl\|Hg17\|chr17 (4389371-4388949)