Non-Coding RNA Search

Ss1.1-Pig1-55I09.5

Sequence:


               
               TAGGAAAGCAGTTCTGAGATTTTGCATCCCTCACCAACTGCTCCCTTTCTTCCCATGCTG
ATCATTAGGTGTTTAAGAAGGAAAGTATGTAAAAGACTACAGACGCCTATCTCCTAAGCT
TTTGTCACCTTTTGATGGTGAGGACTGATTTTCAAATGGCTGGATTTGAGAGTCAGGTAC
TCGCTGGAACCCAGCCGGATAGCTGAGAGTGGGTCAGTATGCAGGAGAAACCCTTTTCCT
TAGCAGAGGGGATCATGGATGCTGGGTAGTCTGTATACTTAACCTGAAACTGTGAAGTGT
CCCCTTTTTGCAAGTAAACCAAAAAGCAAATCTTTGGCGTCCGGTCCCTGAAACACTAAA
CAGAAAACTGCACCCCCTGATCCTCCTGCGGCTAAGTGGTTGAGCAGGGTGGCTTGGTTG
GTTGCAGTCAGACATGTAGCAAGTCAGTAGCTCATGAGGCTCATTGACCAAACCCTGTCC
CTCACCCAGTGTCCCCCATAATTGCACCTCAACCCTTCCTCTATTTGGAGTTATGCCTGC
TGCCTCTGCTTTCAGCTCACCCTTTTCTGCACTGTTTTACCTGAAACACTATATTGTGGC
AGAGGGTGCTCTGGAGTACCTGGTGGAAGGTATTTATTTTATTTTGAGTTTAAAATTTTT
CAGCCTTCTCTTCAATGGTTGCCCTGTCTGCCCTGGAGCCCGGTTTAGCACTGTCTCCTG
CTGTATTGTTCCAAGGTTTTGTTTGACCCTTGAATGTCTTTTCTTCTCCTTCTTCCCTCT
TTTTCTTGTTCTGTACTCAGGACCAACTACATAATTTACAGAGCCCTTTGTTTAAAAATT
AAGAATTTCAAAATGGTGACTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGAAAGCAGTTCTGAGATTTTGCATCCCTCACCAACTGCTCCCTTTCTTCCCATGCTG
ATCATTAGGTGTTTAAGAAGGAAAGTATGTAAAAGACTACAGACGCCTATCTCCTAAGCT
TTTGTCACCTTTTGATGGTGAGGACTGATTTTCAAATGGCTGGATTTGAGAGTCAGGTAC
TCGCTGGAACCCAGCCGGATAGCTGAGAGTGGGTCAGTATGCAGGAGAAACCCTTTTCCT
TAGCAGAGGGGATCATGGATGCTGGGTAGTCTGTATACTTAACCTGAAACTGTGAAGTGT
CCCCTTTTTGCAAGTAAACCAAAAAGCAAATCTTTGGCGTCCGGTCCCTGAAACACTAAA
CAGAAAACTGCACCCCCTGATCCTCCTGCGGCTAAGTGGTTGAGCAGGGTGGCTTGGTTG
GTTGCAGTCAGACATGTAGCAAGTCAGTAGCTCATGAGGCTCATTGACCAAACCCTGTCC
CTCACCCAGTGTCCCCCATAATTGCACCTCAACCCTTCCTCTATTTGGAGTTATGCCTGC
TGCCTCTGCTTTCAGCTCACCCTTTTCTGCACTGTTTTACCTGAAACACTATATTGTGGC
AGAGGGTGCTCTGGAGTACCTGGTGGAAGGTATTTATTTTATTTTGAGTTTAAAATTTTT
CAGCCTTCTCTTCAATGGTTGCCCTGTCTGCCCTGGAGCCCGGTTTAGCACTGTCTCCTG
CTGTATTGTTCCAAGGTTTTGTTTGACCCTTGAATGTCTTTTCTTCTCCTTCTTCCCTCT
TTTTCTTGTTCTGTACTCAGGACCAACTACATAATTTACAGAGCCCTTTGTTTAAAAATT
AAGAATTTCAAAATGGTGACTAGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-848, gnl|bosTau2|chr5 (32688348-32689212)
               

               
               4-848, gnl|Hg17|chr12 (55680742-55679878)
               

               
               4-848, gnl|Mm7|chr10 (127246974-127247756)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-848, gnl|bosTau2|chr5 (32688348-32689212)
               

               
               4-848, gnl|Hg17|chr12 (55680742-55679878)
               

               
               4-848, gnl|Mm7|chr10 (127246974-127247756)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	4-848, gnl\|bosTau2\|chr5 (32688348-32689212)
	4-848, gnl\|Hg17\|chr12 (55680742-55679878)
	4-848, gnl\|Mm7\|chr10 (127246974-127247756)