Non-Coding RNA Search

Ss1.1-Pig1-55L01.5

Sequence:


               
               TTGACTGCAGTACGGACGCGTGGGAGGTGCTCGTTTTTTACCAAACATATGGACAGCATG
GCAAGCCATAACCCCCTTGGTAGAGGAGCTGAATGTCCTTCTTCAGGAATGGCCTGGACT
GCACTACACCGGGCACATTCTCTGTTCTAAGTGCCTTAAGAGAGGGTCGCCCAATCCACA
CGCTTTCCCAGGGGAGTTGCTGAGTCAGCCCAGACCAGAAGGAGTGGCAGAGATCATCTG
CCCCAAGAATGGCAGTGAGCGAGTGAATGTTGCCTTGGTTTACCCACCCACACCGACTGT
GATCAGCCCCTGTTCCAAGAAGAACGTTGGTGAAAAGCACAGAAACCAGTGACTTTTATA
TGGCTGTGGAACTTCCATGGAGAAAAGAGCATCAGAATGTACCTGGACCATCTTTTGTAC
CCGGCAAACCCTCCACGCTCCCAGGCATATTCTGTGACTTCAAGTGCATACGTGTTTGGG
GTGCTTTCAGGGGAGGAAGCACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGACTGCAGTACGGACGCGTGGGAGGTGCTCGTTTTTTACCAAACATATGGACAGCATG
GCAAGCCATAACCCCCTTGGTAGAGGAGCTGAATGTCCTTCTTCAGGAATGGCCTGGACT
GCACTACACCGGGCACATTCTCTGTTCTAAGTGCCTTAAGAGAGGGTCGCCCAATCCACA
CGCTTTCCCAGGGGAGTTGCTGAGTCAGCCCAGACCAGAAGGAGTGGCAGAGATCATCTG
CCCCAAGAATGGCAGTGAGCGAGTGAATGTTGCCTTGGTTTACCCACCCACACCGACTGT
GATCAGCCCCTGTTCCAAGAAGAACGTTGGTGAAAAGCACAGAAACCAGTGACTTTTATA
TGGCTGTGGAACTTCCATGGAGAAAAGAGCATCAGAATGTACCTGGACCATCTTTTGTAC
CCGGCAAACCCTCCACGCTCCCAGGCATATTCTGTGACTTCAAGTGCATACGTGTTTGGG
GTGCTTTCAGGGGAGGAAGCACAC

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               38-192, gnl|bosTau2|chr27 (15233395-15233549)
               

               
               38-192, gnl|canFam2|chr16 (38539843-38539680)
               

               
               38-192, gnl|danRer3|chr21 (10608483-10608644)
               

               
               38-192, gnl|dasNov1|scaffold_14492 (17204-17367)
               

               
               38-192, gnl|fr1|chrUn (160347788-160347625)
               

               
               38-192, gnl|galGal2|chr4 (50052452-50052293)
               

               
               38-192, gnl|hg17|chr8 (8784973-8785136)
               

               
               38-192, gnl|Hg17|chr8 (8785134-8784980)
               

               
               38-192, gnl|mm7|chr8 (34356726-34356563)
               

               
               38-192, gnl|Mm7|chr8 (34356563-34356717)
               

               
               38-192, gnl|monDom2|scaffold_32 (12633578-12633401)
               

               
               38-192, gnl|panTro1|chr7 (9408965-9409128)
               

               
               38-192, gnl|rheMac2|chr8 (11819123-11818960)
               

               
               38-192, gnl|rn3|chr16 (60327913-60328076)
               

               
               38-192, gnl|tetNig1|chr4 (2721233-2721075)
               

               
               38-192, gnl|xenTro1|scaffold_122 (206675-206516)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-192, gnl|bosTau2|chr27 (15233395-15233549)
               

               
               38-192, gnl|canFam2|chr16 (38539843-38539680)
               

               
               38-192, gnl|danRer3|chr21 (10608483-10608644)
               

               
               38-192, gnl|dasNov1|scaffold_14492 (17204-17367)
               

               
               38-192, gnl|fr1|chrUn (160347788-160347625)
               

               
               38-192, gnl|galGal2|chr4 (50052452-50052293)
               

               
               38-192, gnl|hg17|chr8 (8784973-8785136)
               

               
               38-192, gnl|Hg17|chr8 (8785134-8784980)
               

               
               38-192, gnl|mm7|chr8 (34356726-34356563)
               

               
               38-192, gnl|Mm7|chr8 (34356563-34356717)
               

               
               38-192, gnl|monDom2|scaffold_32 (12633578-12633401)
               

               
               38-192, gnl|panTro1|chr7 (9408965-9409128)
               

               
               38-192, gnl|rheMac2|chr8 (11819123-11818960)
               

               
               38-192, gnl|rn3|chr16 (60327913-60328076)
               

               
               38-192, gnl|tetNig1|chr4 (2721233-2721075)
               

               
               38-192, gnl|xenTro1|scaffold_122 (206675-206516)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cje (0.165235)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	38-192, gnl\|bosTau2\|chr27 (15233395-15233549)
	38-192, gnl\|canFam2\|chr16 (38539843-38539680)
	38-192, gnl\|danRer3\|chr21 (10608483-10608644)
	38-192, gnl\|dasNov1\|scaffold_14492 (17204-17367)
	38-192, gnl\|fr1\|chrUn (160347788-160347625)
	38-192, gnl\|galGal2\|chr4 (50052452-50052293)
	38-192, gnl\|hg17\|chr8 (8784973-8785136)
	38-192, gnl\|Hg17\|chr8 (8785134-8784980)
	38-192, gnl\|mm7\|chr8 (34356726-34356563)
	38-192, gnl\|Mm7\|chr8 (34356563-34356717)
	38-192, gnl\|monDom2\|scaffold_32 (12633578-12633401)
	38-192, gnl\|panTro1\|chr7 (9408965-9409128)
	38-192, gnl\|rheMac2\|chr8 (11819123-11818960)
	38-192, gnl\|rn3\|chr16 (60327913-60328076)
	38-192, gnl\|tetNig1\|chr4 (2721233-2721075)
	38-192, gnl\|xenTro1\|scaffold_122 (206675-206516)