Non-Coding RNA Search

Ss1.1-Pig1-56A15.5

Sequence:


               
               GGCTGACCCCAGTTCTCAAGCAGGCCCGAGGGGCAGAGATCTCCAGATGAAGGTTTCCAG
AGTGAAAGAGGGGTTCCCCTTCAAAAAAAAAAGGGGGAGACTGGCTTTAGCCATGCCCCA
AACAAGGAAGCCCTTTCTGCATCAGCCATATTAGGGTTGTCGGCTCCCCATATGCCTATC
CAAGCCTGCAGCCATCTGGGAAGATGAAGCCCCTTCCACAAAGGACCCTGGGGTCCTCTC
CTGTTGGGTGCTACATAGGAATGGGCAGTGATGCCCTTGATGGGGATGCGGTCCTGGAGG
TGCCCTACCTGTACCCCACCTGCAGCCCTTGAGGTGCAGGAAAACTCCCTTTTATTCTGA
GGCCATGCATCCGGGCAGGTGCAGGATTCGCCAGGGTGCGGCCTCCAGGTGCAAACATCA
CAGCGCTGGGGTCCCCAGACCAGGGAAAGTGATGTGAAGGTGGGGACAGCCAGGCCACAG
GTGGCCCCCAGCCTGCTAGTTGGGACATGTAGACAGGGCAGGTGGCTTTCTGTGGTCCAA
GTGAAGGGGGACAGAGGTGGGGTCTCCATTCGTCTTCTGCCCCCAGCATAGCGTCTCCAG
AAGACCCGGCTGCTTTTCTTGCCAGAAGCAGGTGCTAAGGTGGCTGCCCAGGGTTCAGAG
CACTCCCTGGACTCGCCCCTTGATCTCAGCAAGCGGGTGTGCCACTCACAGGGAAGCATG
ATCTCAGCAATAGCGTCCCCTCATTTCTTAACTCCTGATTTCGGCTGTGTTTACAAGGCT
ACCTGAATTTTTTTATTTCAGACAGCTATCACTGATTTTTTTTTTTTAAACCCTTTTTAC
AGAGTCATTCAAAGACTCAGTACTGAAAGATTTGAAGGGCCCTGATGTATCGGTCACGTT
GCAACCTGTAAAAAAAGCTTTGCAGGTCACCCACATCTTTGCTCTCCAAAGATTCCATGT
ATGATTGGGGTGACTTATTTTCCAAAGCTAAAATCATGTGGGCTGACACTTCTTTGAATT
CAGGATTGCCCTGGGAAAAGCCAGATCCTGTAACTGATTTTCCTGATTCTGAGGCTGGGT
TTCAAAGGTTTGTCCCAGACACATTCCAAAGAATTTTGTACCAGAATTTGGATGCACAAT
CCAGCTTACTACTGATAAATGCTGAACCTTGTTTAGGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGACCCCAGTTCTCAAGCAGGCCCGAGGGGCAGAGATCTCCAGATGAAGGTTTCCAG
AGTGAAAGAGGGGTTCCCCTTCAAAAAAAAAAGGGGGAGACTGGCTTTAGCCATGCCCCA
AACAAGGAAGCCCTTTCTGCATCAGCCATATTAGGGTTGTCGGCTCCCCATATGCCTATC
CAAGCCTGCAGCCATCTGGGAAGATGAAGCCCCTTCCACAAAGGACCCTGGGGTCCTCTC
CTGTTGGGTGCTACATAGGAATGGGCAGTGATGCCCTTGATGGGGATGCGGTCCTGGAGG
TGCCCTACCTGTACCCCACCTGCAGCCCTTGAGGTGCAGGAAAACTCCCTTTTATTCTGA
GGCCATGCATCCGGGCAGGTGCAGGATTCGCCAGGGTGCGGCCTCCAGGTGCAAACATCA
CAGCGCTGGGGTCCCCAGACCAGGGAAAGTGATGTGAAGGTGGGGACAGCCAGGCCACAG
GTGGCCCCCAGCCTGCTAGTTGGGACATGTAGACAGGGCAGGTGGCTTTCTGTGGTCCAA
GTGAAGGGGGACAGAGGTGGGGTCTCCATTCGTCTTCTGCCCCCAGCATAGCGTCTCCAG
AAGACCCGGCTGCTTTTCTTGCCAGAAGCAGGTGCTAAGGTGGCTGCCCAGGGTTCAGAG
CACTCCCTGGACTCGCCCCTTGATCTCAGCAAGCGGGTGTGCCACTCACAGGGAAGCATG
ATCTCAGCAATAGCGTCCCCTCATTTCTTAACTCCTGATTTCGGCTGTGTTTACAAGGCT
ACCTGAATTTTTTTATTTCAGACAGCTATCACTGATTTTTTTTTTTTAAACCCTTTTTAC
AGAGTCATTCAAAGACTCAGTACTGAAAGATTTGAAGGGCCCTGATGTATCGGTCACGTT
GCAACCTGTAAAAAAAGCTTTGCAGGTCACCCACATCTTTGCTCTCCAAAGATTCCATGT
ATGATTGGGGTGACTTATTTTCCAAAGCTAAAATCATGTGGGCTGACACTTCTTTGAATT
CAGGATTGCCCTGGGAAAAGCCAGATCCTGTAACTGATTTTCCTGATTCTGAGGCTGGGT
TTCAAAGGTTTGTCCCAGACACATTCCAAAGAATTTTGTACCAGAATTTGGATGCACAAT
CCAGCTTACTACTGATAAATGCTGAACCTTGTTTAGGAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               170-441, - strand, RNAz p=0.828724

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               170-441, - strand, RNAz p=0.828724

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-441, gnl|bosTau2|chr26 (12801834-12802276)
               

               
               2-441, gnl|Hg17|chr15 (29454991-29455489)
               

               
               2-441, gnl|Mm7|chr7 (59638429-59637957)
               


               
               465-1182, gnl|bosTau2|chr26 (12802336-12803071)
               

               
               465-1182, gnl|Hg17|chr15 (29455546-29456192)
               

               
               465-1182, gnl|Mm7|chr7 (59637929-59637226)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-441, gnl|bosTau2|chr26 (12801834-12802276)
               

               
               2-441, gnl|Hg17|chr15 (29454991-29455489)
               

               
               2-441, gnl|Mm7|chr7 (59638429-59637957)
               


               
               465-1182, gnl|bosTau2|chr26 (12802336-12803071)
               

               
               465-1182, gnl|Hg17|chr15 (29455546-29456192)
               

               
               465-1182, gnl|Mm7|chr7 (59637929-59637226)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)
               

               
               cty (0.10408)

	2-441, gnl\|bosTau2\|chr26 (12801834-12802276)
	2-441, gnl\|Hg17\|chr15 (29454991-29455489)
	2-441, gnl\|Mm7\|chr7 (59638429-59637957)

	465-1182, gnl\|bosTau2\|chr26 (12802336-12803071)
	465-1182, gnl\|Hg17\|chr15 (29455546-29456192)
	465-1182, gnl\|Mm7\|chr7 (59637929-59637226)