Non-Coding RNA Search

Ss1.1-Pig1-56B15.5

Sequence:


               
               GGCACAGTGTTCAAAGCCCCATAACTGCAAAGCCAGAGCAGATAACTTGAGGGGAGGGTT
GCGGGGGGGCATATGCCCTCCCACACACTGAAGAAACAAGGAAGATGCCTTTCAAGCCTC
ACTGGGCCTCTCTGGGACATGGCCACCTCATCTGTGTGTGGCTGGTGCAACCTGGCACCA
AGTGGGCTACATATAAGGAACGTGGATACCTTACAAAGCCAGAGCTGGAACATTTCCCAG
GGGTTTTGGGTATTAGCTTGCCCTGGAGAGGAAGGAAATCCACGCAAGCACAGAGACATG
CAGTTTGCTTGCACACACCAGCAGAGCTAAGACTGGAGTCTCCTGGGGCCTGACCTTCGA
AGAGGGAACCAGATGCTATTTACACCTTGACTGGATTGGCGAGCACTGACAGACTGGGGA
AGGACTCATTGCTCAGATGGATTGTAACTCTTGATGATCACTGCTCCTTTCCTCTCCCTG
CAAAAGGAAAAAAACTGGATTGGATTTTTTTTTTTCCTGGTCACTTGAGCACATCTAATC
ACCCATTAGATTTTTCTCTGGGACCTACAGTTTGGCTTTGAGATTGATCATTTTGTGAAT
TTGATTCCTGACGAATTCTTTGCTGCCTGCCCTTTACTCTCTCCTCTGGTTCTCAACCTC
AAGTTCAAATCAGTCCTTTTTAGGTCCCGTGGAACTGTTTTGTACCTGCTTCTTTACTAG
TCTACCCTAGTGCCATCCACCAGCTTTATTCTCTCTCTCTCTCTCTCTCACAAACACACA
GACACACAATTTTAACTTTTTTTTTCTTTTTTGTAAATAATGTACATACTGTCAATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACAGTGTTCAAAGCCCCATAACTGCAAAGCCAGAGCAGATAACTTGAGGGGAGGGTT
GCGGGGGGGCATATGCCCTCCCACACACTGAAGAAACAAGGAAGATGCCTTTCAAGCCTC
ACTGGGCCTCTCTGGGACATGGCCACCTCATCTGTGTGTGGCTGGTGCAACCTGGCACCA
AGTGGGCTACATATAAGGAACGTGGATACCTTACAAAGCCAGAGCTGGAACATTTCCCAG
GGGTTTTGGGTATTAGCTTGCCCTGGAGAGGAAGGAAATCCACGCAAGCACAGAGACATG
CAGTTTGCTTGCACACACCAGCAGAGCTAAGACTGGAGTCTCCTGGGGCCTGACCTTCGA
AGAGGGAACCAGATGCTATTTACACCTTGACTGGATTGGCGAGCACTGACAGACTGGGGA
AGGACTCATTGCTCAGATGGATTGTAACTCTTGATGATCACTGCTCCTTTCCTCTCCCTG
CAAAAGGAAAAAAACTGGATTGGATTTTTTTTTTTCCTGGTCACTTGAGCACATCTAATC
ACCCATTAGATTTTTCTCTGGGACCTACAGTTTGGCTTTGAGATTGATCATTTTGTGAAT
TTGATTCCTGACGAATTCTTTGCTGCCTGCCCTTTACTCTCTCCTCTGGTTCTCAACCTC
AAGTTCAAATCAGTCCTTTTTAGGTCCCGTGGAACTGTTTTGTACCTGCTTCTTTACTAG
TCTACCCTAGTGCCATCCACCAGCTTTATTCTCTCTCTCTCTCTCTCTCACAAACACACA
GACACACAATTTTAACTTTTTTTTTCTTTTTTGTAAATAATGTACATACTGTCAATTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               613-840, gnl|bosTau2|chr1 (35005281-35005059)
               

               
               613-840, gnl|Hg17|chr15 (73450776-73450559)
               

               
               613-840, gnl|Mm7|chr9 (57155572-57155788)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               613-840, gnl|bosTau2|chr1 (35005281-35005059)
               

               
               613-840, gnl|Hg17|chr15 (73450776-73450559)
               

               
               613-840, gnl|Mm7|chr9 (57155572-57155788)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fty (0.17584)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               lyg (0.133103)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               lyg (0.133103)

	613-840, gnl\|bosTau2\|chr1 (35005281-35005059)
	613-840, gnl\|Hg17\|chr15 (73450776-73450559)
	613-840, gnl\|Mm7\|chr9 (57155572-57155788)