Non-Coding RNA Search

Ss1.1-Pig1-56D02.5

Sequence:


               
               GTTGATGCTGGAATATGTACAGTGTGGATCTTCCATAATTTACCTGTCTTCTTGGATGCT
CTGGTTTGGGGCCAAGGGCTGCTTCCCTCACTGCAGACTGTTGGCCTGCGTGGCTGTCCC
CTGCTCCACGTGTTCCCCTGTTGTGCACCACCCTGAGGCTGTCCCAGGAACATCTGGGAC
CCATCCCTGCATAGCTTCTTCTGGGCTTGTCCTCGTCTGGGCTGAGAACCTCCTTTTTGC
ACATGATACTAAAAGCTTCAGTTCTTGACATGCTACTCTATCTTGGGTGATAAAATACAA
ACAATTTTATTGCAAGATGATCTGAATTACCTTTTTACGTACATTCATATGCATATGGGG
TGGCCCACACACCCTTCGACCTTCTGATAATGAGGGAGAAGGATCTAACGTATCAAATTT
TCCCCTAGGTTCTGAGTCAGAGGGAGAGGATGGCTCCCAGGTAGAGTTGGAGCTAGTGGA
GTTGACACTGGGGACCCTGGATCTGCGTGAGTTTGAGGTACTGCCCAAGCAGAGGAAGAG
GAAAAGGAATAAGAGGGAGAGGAAACGAGACCTGGAGGCTGGGGCACAAATGACTCTTCC
TCAGCAACCTCCAGAAGATGAGGCCTTCTCACAGGCAGCCCCTCTGGGGCCTCCCCAGGA
GGAGGCCAAGCTCCCTGGTCAACCAGAGCTCTGGGATGTGCTTCTGGCCGCGTGCCGAGC
TGGCGATGTGGGGCTGCTGAAGCCCTGGCTAGCTGCCAGCCCCGTGGACCCTCGAGTTCT
GTCTCTGCTCAGTGCCCCATTGGGCTCCGGTGGCTTCACCCTCCTGCACGCAGCAGCCGC
AGCTGGGAGAGGCTCAGTGGTTCACCTGCTGCTGGATGCAGGTGCGGACCCCACTGTACA
GTAAGTAAGGGTCTCATTGCTGATCCCTCTGGGGGTATGCAGAGAATGTTCTGGAGGCTA
ACCTGGGCATTGGCTACTTGACAGTATTTCCCTTGGTCTGCTTGGGTGACGCCGGAGGTG
CAGGAGGCAAAATGAACCCATCTTGGGGGGTTTTTGCACCTAGGGACTCCCGGAACCGGC
CCCCGTATACGGTTGCAGCTGATAAATCGACACGTAATGAGTTCCGGAGGTTCATGGAGA
AGCATCCAGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGATGCTGGAATATGTACAGTGTGGATCTTCCATAATTTACCTGTCTTCTTGGATGCT
CTGGTTTGGGGCCAAGGGCTGCTTCCCTCACTGCAGACTGTTGGCCTGCGTGGCTGTCCC
CTGCTCCACGTGTTCCCCTGTTGTGCACCACCCTGAGGCTGTCCCAGGAACATCTGGGAC
CCATCCCTGCATAGCTTCTTCTGGGCTTGTCCTCGTCTGGGCTGAGAACCTCCTTTTTGC
ACATGATACTAAAAGCTTCAGTTCTTGACATGCTACTCTATCTTGGGTGATAAAATACAA
ACAATTTTATTGCAAGATGATCTGAATTACCTTTTTACGTACATTCATATGCATATGGGG
TGGCCCACACACCCTTCGACCTTCTGATAATGAGGGAGAAGGATCTAACGTATCAAATTT
TCCCCTAGGTTCTGAGTCAGAGGGAGAGGATGGCTCCCAGGTAGAGTTGGAGCTAGTGGA
GTTGACACTGGGGACCCTGGATCTGCGTGAGTTTGAGGTACTGCCCAAGCAGAGGAAGAG
GAAAAGGAATAAGAGGGAGAGGAAACGAGACCTGGAGGCTGGGGCACAAATGACTCTTCC
TCAGCAACCTCCAGAAGATGAGGCCTTCTCACAGGCAGCCCCTCTGGGGCCTCCCCAGGA
GGAGGCCAAGCTCCCTGGTCAACCAGAGCTCTGGGATGTGCTTCTGGCCGCGTGCCGAGC
TGGCGATGTGGGGCTGCTGAAGCCCTGGCTAGCTGCCAGCCCCGTGGACCCTCGAGTTCT
GTCTCTGCTCAGTGCCCCATTGGGCTCCGGTGGCTTCACCCTCCTGCACGCAGCAGCCGC
AGCTGGGAGAGGCTCAGTGGTTCACCTGCTGCTGGATGCAGGTGCGGACCCCACTGTACA
GTAAGTAAGGGTCTCATTGCTGATCCCTCTGGGGGTATGCAGAGAATGTTCTGGAGGCTA
ACCTGGGCATTGGCTACTTGACAGTATTTCCCTTGGTCTGCTTGGGTGACGCCGGAGGTG
CAGGAGGCAAAATGAACCCATCTTGGGGGGTTTTTGCACCTAGGGACTCCCGGAACCGGC
CCCCGTATACGGTTGCAGCTGATAAATCGACACGTAATGAGTTCCGGAGGTTCATGGAGA
AGCATCCAGATG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               79-195, - strand, RNAz p=0.990399
               

               
               594-738, - strand, RNAz p=0.996086

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-195, - strand, RNAz p=0.990399
               

               
               594-738, - strand, RNAz p=0.996086

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1152, gnl|bosTau2|chr2 (65176079-65177222)
               

               
               1-1152, gnl|Hg17|chr2 (219924731-219925789)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1152, gnl|bosTau2|chr2 (65176079-65177222)
               

               
               1-1152, gnl|Hg17|chr2 (219924731-219925789)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eep (0.245128)
               

               
               ece (0.229305)
               

               
               nje (0.16592)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               ece (0.229305)
               

               
               nje (0.16592)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

	79-195, - strand, RNAz p=0.990399
	594-738, - strand, RNAz p=0.996086

	1-1152, gnl\|bosTau2\|chr2 (65176079-65177222)
	1-1152, gnl\|Hg17\|chr2 (219924731-219925789)

	eep (0.245128)
	ece (0.229305)
	nje (0.16592)
	nca (0.136874)
	cov (0.132153)
	eje (0.0988338)