Non-Coding RNA Search

Ss1.1-Pig1-56E04.5

Sequence:


               
               GGTCGCCCCGAGGCTTCCCCGGGATGGGGGGTGCAGCTCGTCTGAGCGCCCCTCGAGCGC
TGGTACTCTGGGCAGTACTGGGGGCGGCAGCTCACATCGGACCCGCACCTGACCCAGAGG
ACTGGTGGAGCTACAAGGATAATCTCCAGGGAAACTTCGTGCCAGGGCCTCCCTTCTGGG
GCCTGGTGAACGCAGCCTGGAGTCTGTGTGCTGTGGGGAAGCGGCAGAGCCCTGTGGATG
TGGAGCTGAAGAGGGTCCTTTACGACCCCTTTCTGCCCCCACTGAGACTCAGCACTGGGG
GAGAGAAGCTCCGGGGCACCCTGTACAATACTGGTCGACACGTCTCCTTCCTGCCTGCGC
CCCGGCCCGTGGTCAATGTGTCAGGGGGGCCCCTCCTTTATAGCCACCGGCTCAGCGAAC
TGCTGCTGCTATTTGGAGCACATGACGGAGCTGGCTCGGAACACCAGATCAATCACCAGG
GGTTCTCTGCTGAGGTGCAGCTAATCCACTTCAACCAAGAGCTCTACGGGAACCTCAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCGCCCCGAGGCTTCCCCGGGATGGGGGGTGCAGCTCGTCTGAGCGCCCCTCGAGCGC
TGGTACTCTGGGCAGTACTGGGGGCGGCAGCTCACATCGGACCCGCACCTGACCCAGAGG
ACTGGTGGAGCTACAAGGATAATCTCCAGGGAAACTTCGTGCCAGGGCCTCCCTTCTGGG
GCCTGGTGAACGCAGCCTGGAGTCTGTGTGCTGTGGGGAAGCGGCAGAGCCCTGTGGATG
TGGAGCTGAAGAGGGTCCTTTACGACCCCTTTCTGCCCCCACTGAGACTCAGCACTGGGG
GAGAGAAGCTCCGGGGCACCCTGTACAATACTGGTCGACACGTCTCCTTCCTGCCTGCGC
CCCGGCCCGTGGTCAATGTGTCAGGGGGGCCCCTCCTTTATAGCCACCGGCTCAGCGAAC
TGCTGCTGCTATTTGGAGCACATGACGGAGCTGGCTCGGAACACCAGATCAATCACCAGG
GGTTCTCTGCTGAGGTGCAGCTAATCCACTTCAACCAAGAGCTCTACGGGAACCTCAGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9MZT4_MEGLY

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9MZT4_MEGLY

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               307-497, gnl|bosTau2|chr18 (50539452-50539642)
               

               
               307-497, gnl|canFam2|chr1 (110558243-110558008)
               

               
               307-497, gnl|dasNov1|scaffold_96267 (5945-6177)
               

               
               307-497, gnl|fr1|chrUn (293316276-293316076)
               

               
               307-497, gnl|hg17|chr19 (53835157-53835391)
               

               
               307-497, gnl|Hg17|chr19 (53835351-53835161)
               

               
               307-497, gnl|loxAfr1|scaffold_6492 (69393-69195)
               

               
               307-497, gnl|mm7|chr7 (41878721-41878489)
               

               
               307-497, gnl|Mm7|chr7 (41878525-41878715)
               

               
               307-497, gnl|monDom2|scaffold_509 (39206-39444)
               

               
               307-497, gnl|panTro1|chr20 (51216812-51217046)
               

               
               307-497, gnl|rheMac2|chr19 (54945183-54945417)
               

               
               307-497, gnl|rn3|chr1 (96249072-96248840)
               

               
               307-497, gnl|tetNig1|chrUn_random (37606214-37606005)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               307-497, gnl|bosTau2|chr18 (50539452-50539642)
               

               
               307-497, gnl|canFam2|chr1 (110558243-110558008)
               

               
               307-497, gnl|dasNov1|scaffold_96267 (5945-6177)
               

               
               307-497, gnl|fr1|chrUn (293316276-293316076)
               

               
               307-497, gnl|hg17|chr19 (53835157-53835391)
               

               
               307-497, gnl|Hg17|chr19 (53835351-53835161)
               

               
               307-497, gnl|loxAfr1|scaffold_6492 (69393-69195)
               

               
               307-497, gnl|mm7|chr7 (41878721-41878489)
               

               
               307-497, gnl|Mm7|chr7 (41878525-41878715)
               

               
               307-497, gnl|monDom2|scaffold_509 (39206-39444)
               

               
               307-497, gnl|panTro1|chr20 (51216812-51217046)
               

               
               307-497, gnl|rheMac2|chr19 (54945183-54945417)
               

               
               307-497, gnl|rn3|chr1 (96249072-96248840)
               

               
               307-497, gnl|tetNig1|chrUn_random (37606214-37606005)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               fhi (0.169578)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fhi (0.169578)

	307-497, gnl\|bosTau2\|chr18 (50539452-50539642)
	307-497, gnl\|canFam2\|chr1 (110558243-110558008)
	307-497, gnl\|dasNov1\|scaffold_96267 (5945-6177)
	307-497, gnl\|fr1\|chrUn (293316276-293316076)
	307-497, gnl\|hg17\|chr19 (53835157-53835391)
	307-497, gnl\|Hg17\|chr19 (53835351-53835161)
	307-497, gnl\|loxAfr1\|scaffold_6492 (69393-69195)
	307-497, gnl\|mm7\|chr7 (41878721-41878489)
	307-497, gnl\|Mm7\|chr7 (41878525-41878715)
	307-497, gnl\|monDom2\|scaffold_509 (39206-39444)
	307-497, gnl\|panTro1\|chr20 (51216812-51217046)
	307-497, gnl\|rheMac2\|chr19 (54945183-54945417)
	307-497, gnl\|rn3\|chr1 (96249072-96248840)
	307-497, gnl\|tetNig1\|chrUn_random (37606214-37606005)