Non-Coding RNA Search

Ss1.1-Pig1-56E13.5

Sequence:


               
               CAAGGCCCCATTCCGGGCCACTGCCTCTTGCCATGTCGTTTCTGTCTTCAGCCTTCAGCT
CCTCTGGGTGTGTGCTCACTGTACCAGCCTCTGCCTCCAGGGAAGGTGTACTCGTCAGAA
CCCCACTTGCTCCATTCAGACACCTATAAGCCAGGCCAGCATCAGGCTCCTGGTGGAGGA
TGGGACTGCCGAAGCTGTGGTGACCTGTAGAAATCATCAAGTGGCAGCAGCACTGGGGCT
GTGTCCTAGTGAGTGGGCCTCCCTCCTAGAGTTTGTCCAAGGGCCAGGGAAAGTGGCTTT
GCAATTTACAGGACCTGGAGCCCAACTCGAGTCCTCAGCCAAGACTGATGAGCCCTTGGC
CCTCTTCCTCTGGACGCTCTGTGCCAGTGCCTCTGTCCTCCGCCCTGTTGTGCTTTCTTT
TGAGCTTGAGAGGAAACCCTCCAAGATCATCCCGTCAGAACCTCCTCGGCTCCACCGATT
CCAGTGTGGGGAGCTCCCTTTCCTGACTCGTGTGCATCCCAGGATCCGACTCTCATGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGCCCCATTCCGGGCCACTGCCTCTTGCCATGTCGTTTCTGTCTTCAGCCTTCAGCT
CCTCTGGGTGTGTGCTCACTGTACCAGCCTCTGCCTCCAGGGAAGGTGTACTCGTCAGAA
CCCCACTTGCTCCATTCAGACACCTATAAGCCAGGCCAGCATCAGGCTCCTGGTGGAGGA
TGGGACTGCCGAAGCTGTGGTGACCTGTAGAAATCATCAAGTGGCAGCAGCACTGGGGCT
GTGTCCTAGTGAGTGGGCCTCCCTCCTAGAGTTTGTCCAAGGGCCAGGGAAAGTGGCTTT
GCAATTTACAGGACCTGGAGCCCAACTCGAGTCCTCAGCCAAGACTGATGAGCCCTTGGC
CCTCTTCCTCTGGACGCTCTGTGCCAGTGCCTCTGTCCTCCGCCCTGTTGTGCTTTCTTT
TGAGCTTGAGAGGAAACCCTCCAAGATCATCCCGTCAGAACCTCCTCGGCTCCACCGATT
CCAGTGTGGGGAGCTCCCTTTCCTGACTCGTGTGCATCCCAGGATCCGACTCTCATGCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34870915|ref|XP_340822.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34870915|ref|XP_340822.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               78-540, gnl|bosTau2|chr2 (73242438-73241977)
               

               
               78-540, gnl|Hg17|chr17 (8073367-8072281)
               

               
               78-540, gnl|Mm7|chr11 (69116455-69117683)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-540, gnl|bosTau2|chr2 (73242438-73241977)
               

               
               78-540, gnl|Hg17|chr17 (8073367-8072281)
               

               
               78-540, gnl|Mm7|chr11 (69116455-69117683)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cga (0.279096)
               

               
               eye (0.170503)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               eye (0.170503)

	78-540, gnl\|bosTau2\|chr2 (73242438-73241977)
	78-540, gnl\|Hg17\|chr17 (8073367-8072281)
	78-540, gnl\|Mm7\|chr11 (69116455-69117683)