Non-Coding RNA Search

Ss1.1-Pig1-56G09.5

Sequence:


               
               TTATTCTTTAGCAAACATTTACCAAGTGCCTGCCACGCGCCAGGTCCCGTGTGAGTCACT
GGGGGCAGGAGGCCAGGGCACAGATGGGCAGGGAAGGATCCCTCCCGGATGGCGGTGGCC
CCCAGCTCTTGGCCCCTCGCCTTCCCTCCTCTCCCCTCCCCACGGCCTCCCCCTGCTGCC
CTCGTCCACACTGCAGGCTGCCGTGTCCGGATCCCTGCTGAGGTGCTCATCCTGAACTCG
ATTGTTCTGCCACACAAGGAGCTGAGCCGCAGCTTCACCAACCAGATCATCCTCTGAAGG
GGCTGCCAGGAGCCCCCCCCCCCCTTTCCTCTCCTGTCTGCACCCCTGAGGCTTCTGCCT
GCAAGGCCAGCCTCTGTCCAGGAGGGACTGGAGGAAGCCAGGCAGGCTCTTCACATCGTG
GGGAGCAACACGGGTGACCGGGGCCTCCCTCGCCACTCCCTAATAAACCTGGGTGAACCT
TGGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTCTTTAGCAAACATTTACCAAGTGCCTGCCACGCGCCAGGTCCCGTGTGAGTCACT
GGGGGCAGGAGGCCAGGGCACAGATGGGCAGGGAAGGATCCCTCCCGGATGGCGGTGGCC
CCCAGCTCTTGGCCCCTCGCCTTCCCTCCTCTCCCCTCCCCACGGCCTCCCCCTGCTGCC
CTCGTCCACACTGCAGGCTGCCGTGTCCGGATCCCTGCTGAGGTGCTCATCCTGAACTCG
ATTGTTCTGCCACACAAGGAGCTGAGCCGCAGCTTCACCAACCAGATCATCCTCTGAAGG
GGCTGCCAGGAGCCCCCCCCCCCCTTTCCTCTCCTGTCTGCACCCCTGAGGCTTCTGCCT
GCAAGGCCAGCCTCTGTCCAGGAGGGACTGGAGGAAGCCAGGCAGGCTCTTCACATCGTG
GGGAGCAACACGGGTGACCGGGGCCTCCCTCGCCACTCCCTAATAAACCTGGGTGAACCT
TGGAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-192, - strand, RNAz p=0.959143
               

               
               273-426, - strand, RNAz p=0.729022

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-192, - strand, RNAz p=0.959143
               

               
               273-426, - strand, RNAz p=0.729022

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               293-404, - strand, RNAmicro p=0.996315

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               293-404, - strand, RNAmicro p=0.996315

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-484, gnl|bosTau2|chr2 (64360712-64360253)
               

               
               2-484, gnl|Hg17|chr2 (220196742-220197216)
               

               
               2-484, gnl|Mm7|chr1 (75668932-75669369)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-484, gnl|bosTau2|chr2 (64360712-64360253)
               

               
               2-484, gnl|Hg17|chr2 (220196742-220197216)
               

               
               2-484, gnl|Mm7|chr1 (75668932-75669369)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               col (0.195008)
               

               
               ton (0.1755)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               cly (0.120642)

	40-192, - strand, RNAz p=0.959143
	273-426, - strand, RNAz p=0.729022

	2-484, gnl\|bosTau2\|chr2 (64360712-64360253)
	2-484, gnl\|Hg17\|chr2 (220196742-220197216)
	2-484, gnl\|Mm7\|chr1 (75668932-75669369)