Non-Coding RNA Search

Ss1.1-Pig1-56N13.5

Sequence:


               
               CCCACAAGTCCGAACTGCTGCTTCGACTGAAGAAAGAGCCATTTGGGGAAATCGGGCCGA
GCTATAAAGAGGACCTCTGCCCCCAAAACGCCAAGCTGCTCAGCACCTTCCTGAACCAGG
CAGGCCTGGATGCCTTCCTCCTGGAGCTTCACGAAATGATGGTCTTGAAGCTGAAGAACC
CCCGGTCTGCGAAGGATTTCAACCCTCAGTGGAGCCTGAGAGACACGCTGGTCAGTTACA
TGGAGACGAAAGGGAGCGACATTCCTCCCGAAATGGAATCTCAGTTCCCAGAGGAGATCC
TGCTTTCCCACTGTGTCTCGGTGTGGAAGAAGGCTGCCGAGCTGAAATGGAATCGACACA
CGAGATAGACCCGCGCCCCGTCCTCCTCACCGTGGGCTGGGCTCCGCCGTGGGCTTTGGA
AGGACCGCCGTCGGCGCAGGCGCTGCATTCGAGGCCAGGCTGCGCCGTGCTGGCTGTGTC
AGGAGCGTGCACACTCTGGAAACCTCTCTCCATTTTCTGAGTGCCGCTCCCTGGGCGTGA
GAGCTGAAGAGTGCATGGAGCTGGAATAAGCCACCATCCTCTGCATCCAGGAGACACCGC
CCGGGAGCCCCTCAGCTGCGCGCCCAGGAAGCGCGGCCCAGGCGTCCCAGCCTCTCAGCG
CGCGCTCCGCCACCGGGCCTTCCTGCTCAGACTGTTGCTGCGGTGGTGAGAGGGCGGGAG
AAGGGTCCGTGATTTTTGCCTTTTCTTTTTTCCTTATTCTGCACTCGCAGAAGATAGTTG
GCTTTCTTTTTTCCACTCTTTTAACTTCCGAGCAGGGCTCGGATATTTCTAGGTTTTCAA
GAGGATGTGACAAAGTGCCAGGCTTTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACAAGTCCGAACTGCTGCTTCGACTGAAGAAAGAGCCATTTGGGGAAATCGGGCCGA
GCTATAAAGAGGACCTCTGCCCCCAAAACGCCAAGCTGCTCAGCACCTTCCTGAACCAGG
CAGGCCTGGATGCCTTCCTCCTGGAGCTTCACGAAATGATGGTCTTGAAGCTGAAGAACC
CCCGGTCTGCGAAGGATTTCAACCCTCAGTGGAGCCTGAGAGACACGCTGGTCAGTTACA
TGGAGACGAAAGGGAGCGACATTCCTCCCGAAATGGAATCTCAGTTCCCAGAGGAGATCC
TGCTTTCCCACTGTGTCTCGGTGTGGAAGAAGGCTGCCGAGCTGAAATGGAATCGACACA
CGAGATAGACCCGCGCCCCGTCCTCCTCACCGTGGGCTGGGCTCCGCCGTGGGCTTTGGA
AGGACCGCCGTCGGCGCAGGCGCTGCATTCGAGGCCAGGCTGCGCCGTGCTGGCTGTGTC
AGGAGCGTGCACACTCTGGAAACCTCTCTCCATTTTCTGAGTGCCGCTCCCTGGGCGTGA
GAGCTGAAGAGTGCATGGAGCTGGAATAAGCCACCATCCTCTGCATCCAGGAGACACCGC
CCGGGAGCCCCTCAGCTGCGCGCCCAGGAAGCGCGGCCCAGGCGTCCCAGCCTCTCAGCG
CGCGCTCCGCCACCGGGCCTTCCTGCTCAGACTGTTGCTGCGGTGGTGAGAGGGCGGGAG
AAGGGTCCGTGATTTTTGCCTTTTCTTTTTTCCTTATTCTGCACTCGCAGAAGATAGTTG
GCTTTCTTTTTTCCACTCTTTTAACTTCCGAGCAGGGCTCGGATATTTCTAGGTTTTCAA
GAGGATGTGACAAAGTGCCAGGCTTTTTTTTTTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|10438750|dbj|BAB15330.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10438750|dbj|BAB15330.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               37-214, gnl|bosTau2|chr19 (47637304-47637127)
               

               
               37-214, gnl|Hg17|chr17 (75978408-75978591)
               

               
               37-214, gnl|Mm7|chr11 (119592883-119593060)
               


               
               473-846, gnl|bosTau2|chr19 (47635260-47634882)
               

               
               473-846, gnl|Mm7|chr11 (119595364-119595691)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-214, gnl|bosTau2|chr19 (47637304-47637127)
               

               
               37-214, gnl|Hg17|chr17 (75978408-75978591)
               

               
               37-214, gnl|Mm7|chr11 (119592883-119593060)
               


               
               473-846, gnl|bosTau2|chr19 (47635260-47634882)
               

               
               473-846, gnl|Mm7|chr11 (119595364-119595691)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fbs (0.175346)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	37-214, gnl\|bosTau2\|chr19 (47637304-47637127)
	37-214, gnl\|Hg17\|chr17 (75978408-75978591)
	37-214, gnl\|Mm7\|chr11 (119592883-119593060)

	473-846, gnl\|bosTau2\|chr19 (47635260-47634882)
	473-846, gnl\|Mm7\|chr11 (119595364-119595691)