Ss1.1-Pig1-57J17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTACGGGCTGTCGTGCGGGCGAGTGAGCGACGGTAGCAAGGTGTCCGTGTTCCACGTGA AGCTCACCGACAGTGCTCTGAGGGCCTTCGAGAATTACCGCGTCTGCCAGGATTCTGTTT CGCTGAGACCCTCAATCCGATTTCAAGGAAGTCAAGGGCACATCTCCATCCCCCAGCCTG ACTGCCCCACGGAGGCACGGACATTCTCCTTCTACCTCTCCAACATTGGCCGTGACAGCC CCCAGGGCAGCTTCGACTGTATCCAGCAGTACGTCTCCAGCCATGGGGATGTTCACCTGG ACTGCCTGGGCAGTATCCAGGACAAAATTACAGTGTGTGCCACTGATGACTCCTACCAGA AAGCGCGGCAGAGCCTGGCGCAGGCTGAGGAGGAGACGCGGAGTCGAGGTGCCATCGTCA TCAAGCCTGGAGGCCGTTACTTGGGCAAGAAGGTTCAGTTTCGGAAACCGGCACCAGGGG CAGTGGATGCTGTGCCCTCCCGGAAGCGGGCGACCCCTATCAACCTGGCGAGTGCCATCA AGAAGACCAGCGTTGGCAGCATTAGTGGGGCCAGCGGGGTATCTCAGAGGCCCTTCCGTG ACCGAGTGCTGCACCTCCTGGCACTGAGGCCTTACCGGAAGGCGGAGTTGCTGCTGAGGC TGCAGAAGGATGGCCTGGTGCAGGCAGACAAGGACGCACTGGATGGCCTCCTACAACAGG TGGCCAACGTGAATGCCAAGGATGGCACGTGGACACTGAAGGACTGTGTGTACAAGGATG TGCAGAAGGACTGGCCCGGTTACTCAGAGGGGGACCAGCAGTTGCTGAAGCGGATGCTCA TCCGGAAGCTGTGCCAGTCACAGAGCACAGGCGGCCTCCCTGGAGACCTTGCTGCCAACA GCCCTCCAGGCGACCATGGGAGCTCAGCCTCACCTCCTCAGAAACGGCCGCAGCCTTCTG ATTTCATTGACCCTCTGGCCAACAAGAAACCCAGGATATCGCACTTCACCCAGAGAGCTC AGCCCACAGTCAATGGGAAGCTGAGCCTGCCCCACAGCCGCGAGGCCCTGCTGCCCACCC CAGGCCCACTGGCTGGCACGGACCCTCATCTGCCCTTGCGGCTGGAGCCCCCACGGTCCC ATGACCCCCTGGCTGACGTCAGCAACGACCTGGGCCACAGTGGCCGGGACTGCGAGCATG GGGAAATGGCTGCCCCAGCCCCTACTGCACACCTCAGCCTGCCTCTGCTGATGGACTGTG CCCAGCCCAGCAGGCCCCACGGCAGCTCCTTACATGGCAAGTCCAAGAAGAAGTCCAAGA AGCACAAAGACAAGGAGAGGGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTACGGGCTGTCGTGCGGGCGAGTGAGCGACGGTAGCAAGGTGTCCGTGTTCCACGTGA AGCTCACCGACAGTGCTCTGAGGGCCTTCGAGAATTACCGCGTCTGCCAGGATTCTGTTT CGCTGAGACCCTCAATCCGATTTCAAGGAAGTCAAGGGCACATCTCCATCCCCCAGCCTG ACTGCCCCACGGAGGCACGGACATTCTCCTTCTACCTCTCCAACATTGGCCGTGACAGCC CCCAGGGCAGCTTCGACTGTATCCAGCAGTACGTCTCCAGCCATGGGGATGTTCACCTGG ACTGCCTGGGCAGTATCCAGGACAAAATTACAGTGTGTGCCACTGATGACTCCTACCAGA AAGCGCGGCAGAGCCTGGCGCAGGCTGAGGAGGAGACGCGGAGTCGAGGTGCCATCGTCA TCAAGCCTGGAGGCCGTTACTTGGGCAAGAAGGTTCAGTTTCGGAAACCGGCACCAGGGG CAGTGGATGCTGTGCCCTCCCGGAAGCGGGCGACCCCTATCAACCTGGCGAGTGCCATCA AGAAGACCAGCGTTGGCAGCATTAGTGGGGCCAGCGGGGTATCTCAGAGGCCCTTCCGTG ACCGAGTGCTGCACCTCCTGGCACTGAGGCCTTACCGGAAGGCGGAGTTGCTGCTGAGGC TGCAGAAGGATGGCCTGGTGCAGGCAGACAAGGACGCACTGGATGGCCTCCTACAACAGG TGGCCAACGTGAATGCCAAGGATGGCACGTGGACACTGAAGGACTGTGTGTACAAGGATG TGCAGAAGGACTGGCCCGGTTACTCAGAGGGGGACCAGCAGTTGCTGAAGCGGATGCTCA TCCGGAAGCTGTGCCAGTCACAGAGCACAGGCGGCCTCCCTGGAGACCTTGCTGCCAACA GCCCTCCAGGCGACCATGGGAGCTCAGCCTCACCTCCTCAGAAACGGCCGCAGCCTTCTG ATTTCATTGACCCTCTGGCCAACAAGAAACCCAGGATATCGCACTTCACCCAGAGAGCTC AGCCCACAGTCAATGGGAAGCTGAGCCTGCCCCACAGCCGCGAGGCCCTGCTGCCCACCC CAGGCCCACTGGCTGGCACGGACCCTCATCTGCCCTTGCGGCTGGAGCCCCCACGGTCCC ATGACCCCCTGGCTGACGTCAGCAACGACCTGGGCCACAGTGGCCGGGACTGCGAGCATG GGGAAATGGCTGCCCCAGCCCCTACTGCACACCTCAGCCTGCCTCTGCTGATGGACTGTG CCCAGCCCAGCAGGCCCCACGGCAGCTCCTTACATGGCAAGTCCAAGAAGAAGTCCAAGA AGCACAAAGACAAGGAGAGGGCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1048-1152, - strand, RNAz p=0.856927 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1048-1152, - strand, RNAz p=0.856927 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-111, gnl|bosTau2|chr7 (1975683-1975573) | |
| 1-111, gnl|canFam2|chr20 (47515120-47514962) | |
| 1-111, gnl|danRer3|chr22 (20165224-20165065) | |
| 1-111, gnl|fr1|chrUn (97774010-97774168) | |
| 1-111, gnl|galGal2|chr28 (3251375-3251218) | |
| 1-111, gnl|hg17|chr19 (18493727-18493885) | |
| 1-111, gnl|Hg17|chr19 (18493840-18493730) | |
| 1-111, gnl|mm7|chr8 (68994987-68994829) | |
| 1-111, gnl|Mm7|chr8 (68994872-68994982) | |
| 1-111, gnl|monDom2|scaffold_75 (1014845-1015000) | |
| 1-111, gnl|rheMac2|chr19 (18134318-18134476) | |
| 1-111, gnl|rn3|chr16 (19397109-19397267) | |
| 1-111, gnl|tetNig1|chrUn_random (42467689-42467531) | |
| 1-111, gnl|xenTro1|scaffold_1031 (304819-304668) | |
| 158-280, gnl|bosTau2|chr7 (1918805-1918683) | |
| 158-280, gnl|canFam2|chr20 (47570573-47570456) | |
| 158-280, gnl|danRer3|chr22 (20212670-20212553) | |
| 158-280, gnl|dasNov1|scaffold_8929 (18199-18316) | |
| 158-280, gnl|echTel1|scaffold_229214 (4003-3886) | |
| 158-280, gnl|fr1|chrUn (97766923-97767039) | |
| 158-280, gnl|galGal2|chr28 (3268412-3268295) | |
| 158-280, gnl|hg17|chr19 (18437603-18437720) | |
| 158-280, gnl|Hg17|chr19 (18437729-18437607) | |
| 158-280, gnl|loxAfr1|scaffold_35235 (17781-17898) | |
| 158-280, gnl|mm7|chr8 (69034104-69033987) | |
| 158-280, gnl|Mm7|chr8 (69033976-69034098) | |
| 158-280, gnl|monDom2|scaffold_75 (908058-908175) | |
| 158-280, gnl|oryCun1|scaffold_210003 (90933-90816) | |
| 158-280, gnl|rheMac2|chr19 (18074055-18074172) | |
| 158-280, gnl|rn3|chr16 (19362576-19362693) | |
| 158-280, gnl|tetNig1|chrUn_random (42475464-42475348) | |
| 158-280, gnl|xenTro1|scaffold_1031 (341543-341426) | |
| 444-722, gnl|bosTau2|chr7 (1915962-1915684) | |
| 444-722, gnl|Hg17|chr19 (18433663-18433385) | |
| 444-722, gnl|Mm7|chr8 (69036694-69036963) | |
| 928-1344, gnl|bosTau2|chr7 (1905074-1904658) | |
| 928-1344, gnl|Hg17|chr19 (18422799-18422368) | |
| 928-1344, gnl|Mm7|chr8 (69040691-69041099) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-111, gnl|bosTau2|chr7 (1975683-1975573) | |
| 1-111, gnl|canFam2|chr20 (47515120-47514962) | |
| 1-111, gnl|danRer3|chr22 (20165224-20165065) | |
| 1-111, gnl|fr1|chrUn (97774010-97774168) | |
| 1-111, gnl|galGal2|chr28 (3251375-3251218) | |
| 1-111, gnl|hg17|chr19 (18493727-18493885) | |
| 1-111, gnl|Hg17|chr19 (18493840-18493730) | |
| 1-111, gnl|mm7|chr8 (68994987-68994829) | |
| 1-111, gnl|Mm7|chr8 (68994872-68994982) | |
| 1-111, gnl|monDom2|scaffold_75 (1014845-1015000) | |
| 1-111, gnl|rheMac2|chr19 (18134318-18134476) | |
| 1-111, gnl|rn3|chr16 (19397109-19397267) | |
| 1-111, gnl|tetNig1|chrUn_random (42467689-42467531) | |
| 1-111, gnl|xenTro1|scaffold_1031 (304819-304668) | |
| 158-280, gnl|bosTau2|chr7 (1918805-1918683) | |
| 158-280, gnl|canFam2|chr20 (47570573-47570456) | |
| 158-280, gnl|danRer3|chr22 (20212670-20212553) | |
| 158-280, gnl|dasNov1|scaffold_8929 (18199-18316) | |
| 158-280, gnl|echTel1|scaffold_229214 (4003-3886) | |
| 158-280, gnl|fr1|chrUn (97766923-97767039) | |
| 158-280, gnl|galGal2|chr28 (3268412-3268295) | |
| 158-280, gnl|hg17|chr19 (18437603-18437720) | |
| 158-280, gnl|Hg17|chr19 (18437729-18437607) | |
| 158-280, gnl|loxAfr1|scaffold_35235 (17781-17898) | |
| 158-280, gnl|mm7|chr8 (69034104-69033987) | |
| 158-280, gnl|Mm7|chr8 (69033976-69034098) | |
| 158-280, gnl|monDom2|scaffold_75 (908058-908175) | |
| 158-280, gnl|oryCun1|scaffold_210003 (90933-90816) | |
| 158-280, gnl|rheMac2|chr19 (18074055-18074172) | |
| 158-280, gnl|rn3|chr16 (19362576-19362693) | |
| 158-280, gnl|tetNig1|chrUn_random (42475464-42475348) | |
| 158-280, gnl|xenTro1|scaffold_1031 (341543-341426) | |
| 444-722, gnl|bosTau2|chr7 (1915962-1915684) | |
| 444-722, gnl|Hg17|chr19 (18433663-18433385) | |
| 444-722, gnl|Mm7|chr8 (69036694-69036963) | |
| 928-1344, gnl|bosTau2|chr7 (1905074-1904658) | |
| 928-1344, gnl|Hg17|chr19 (18422799-18422368) | |
| 928-1344, gnl|Mm7|chr8 (69040691-69041099) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) | |
| pla (0.133672) |