Non-Coding RNA Search

Ss1.1-Pig1-58B19.5

Sequence:


               
               TGAAGTACATCGTCTACAAGGAGCGAGTGAGTGCATCGGACGGCTTCTGGAAATCGGTGG
CCACTCGCGTGCCCAAGGAACCCCCAGAGATTCGCATCCTCAATCCATATTTCATCCAGG
AAGCCGCCTTCACCCTCATCGGACTGCCTTTCAACAATGGCCTCATGGGCCGAGGGAACA
TCCCGACCCTCGGCAGTGTGGCCGTGACCATGGCACTGCACGGCTGCGATGAGGTGGCCG
TCGCCGGCTTCGGCTACGACATGAGCACACCCAATGCACCCCTGCACTACTACGAGACCG
TGCGCATGGCAGCCATCAAAGAGTCCTGGACGCACAACATCCAGCGAGAGAAAGAGTTTC
TGCAGAAGCTGGTCAAAGCACGCGTCATCACTGACCTGACCAGCGGCATCTGAGGCGGAC
CCAGCACACCGCCACCTGCCCACGGCATTGGCCCCGGTCGGGCTCTGCCTGAGAGGCGTG
GGAGCCTTCGGGCCCAGGGAAGGACAGTGCCAAGTGTCCCCGGGGTGGCAAGGCCTTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGTACATCGTCTACAAGGAGCGAGTGAGTGCATCGGACGGCTTCTGGAAATCGGTGG
CCACTCGCGTGCCCAAGGAACCCCCAGAGATTCGCATCCTCAATCCATATTTCATCCAGG
AAGCCGCCTTCACCCTCATCGGACTGCCTTTCAACAATGGCCTCATGGGCCGAGGGAACA
TCCCGACCCTCGGCAGTGTGGCCGTGACCATGGCACTGCACGGCTGCGATGAGGTGGCCG
TCGCCGGCTTCGGCTACGACATGAGCACACCCAATGCACCCCTGCACTACTACGAGACCG
TGCGCATGGCAGCCATCAAAGAGTCCTGGACGCACAACATCCAGCGAGAGAAAGAGTTTC
TGCAGAAGCTGGTCAAAGCACGCGTCATCACTGACCTGACCAGCGGCATCTGAGGCGGAC
CCAGCACACCGCCACCTGCCCACGGCATTGGCCCCGGTCGGGCTCTGCCTGAGAGGCGTG
GGAGCCTTCGGGCCCAGGGAAGGACAGTGCCAAGTGTCCCCGGGGTGGCAAGGCCTTGGC

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               29-193, gnl|bosTau2|chr3 (71032726-71032558)
               

               
               29-193, gnl|canFam2|chr15 (19335463-19335294)
               

               
               29-193, gnl|danRer3|chr6 (230703-230871)
               

               
               29-193, gnl|fr1|chrUn (128535056-128534898)
               

               
               29-193, gnl|galGal2|chr8 (20604862-20605030)
               

               
               29-193, gnl|hg17|chr1 (44055153-44055322)
               

               
               29-193, gnl|Hg17|chr1 (44055168-44055336)
               

               
               29-193, gnl|loxAfr1|scaffold_2476 (53183-53352)
               

               
               29-193, gnl|mm7|chr4 (117316960-117316790)
               

               
               29-193, gnl|Mm7|chr4 (117316940-117316779)
               

               
               29-193, gnl|oryCun1|scaffold_213522 (130286-130118)
               

               
               29-193, gnl|panTro1|chr1 (45044938-45045107)
               

               
               29-193, gnl|rheMac2|chr1 (46843761-46843930)
               

               
               29-193, gnl|rn3|chr5 (138410507-138410339)
               

               
               29-193, gnl|tetNig1|chr15 (3769793-3769635)
               

               
               29-193, gnl|xenTro1|scaffold_1 (6848677-6848844)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-193, gnl|bosTau2|chr3 (71032726-71032558)
               

               
               29-193, gnl|canFam2|chr15 (19335463-19335294)
               

               
               29-193, gnl|danRer3|chr6 (230703-230871)
               

               
               29-193, gnl|fr1|chrUn (128535056-128534898)
               

               
               29-193, gnl|galGal2|chr8 (20604862-20605030)
               

               
               29-193, gnl|hg17|chr1 (44055153-44055322)
               

               
               29-193, gnl|Hg17|chr1 (44055168-44055336)
               

               
               29-193, gnl|loxAfr1|scaffold_2476 (53183-53352)
               

               
               29-193, gnl|mm7|chr4 (117316960-117316790)
               

               
               29-193, gnl|Mm7|chr4 (117316940-117316779)
               

               
               29-193, gnl|oryCun1|scaffold_213522 (130286-130118)
               

               
               29-193, gnl|panTro1|chr1 (45044938-45045107)
               

               
               29-193, gnl|rheMac2|chr1 (46843761-46843930)
               

               
               29-193, gnl|rn3|chr5 (138410507-138410339)
               

               
               29-193, gnl|tetNig1|chr15 (3769793-3769635)
               

               
               29-193, gnl|xenTro1|scaffold_1 (6848677-6848844)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	29-193, gnl\|bosTau2\|chr3 (71032726-71032558)
	29-193, gnl\|canFam2\|chr15 (19335463-19335294)
	29-193, gnl\|danRer3\|chr6 (230703-230871)
	29-193, gnl\|fr1\|chrUn (128535056-128534898)
	29-193, gnl\|galGal2\|chr8 (20604862-20605030)
	29-193, gnl\|hg17\|chr1 (44055153-44055322)
	29-193, gnl\|Hg17\|chr1 (44055168-44055336)
	29-193, gnl\|loxAfr1\|scaffold_2476 (53183-53352)
	29-193, gnl\|mm7\|chr4 (117316960-117316790)
	29-193, gnl\|Mm7\|chr4 (117316940-117316779)
	29-193, gnl\|oryCun1\|scaffold_213522 (130286-130118)
	29-193, gnl\|panTro1\|chr1 (45044938-45045107)
	29-193, gnl\|rheMac2\|chr1 (46843761-46843930)
	29-193, gnl\|rn3\|chr5 (138410507-138410339)
	29-193, gnl\|tetNig1\|chr15 (3769793-3769635)
	29-193, gnl\|xenTro1\|scaffold_1 (6848677-6848844)