Ss1.1-Pig1-58D17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCAAGTGGTTGACGAGCCCTGTGCGGCGGCTGAGCAGCGGCAAGGCCGATGGGCACGTG AAGAAGCTGGCGCACAAGCACAAGAAGAGCAGGGAGGTCCGCAAGAGCGCTGATGCCGGC TCACAGAAGGACTCGGACGACAGTGCAGCCACCCCACAGGACGAGACGGTAGAAGAGAGA GGCCGGAATGAGGGCCTGAGCAGTGGCACGCTCTCCAAATCCTCGTCATCGGGCATGCAG AGCTGTGGAGAGGAAGAAGGGGAGGAGGGGGCGGATGCCGTGCCCCTGCCCCCGCCCATG GCCATCCAGCAGCACAGCCTGCTGCAGCCGGACTCGCAGGATGACAAGGCCTCTTCACGG TTACTAGTCCGCCCCACCAGCTCCGAGACGCCCAGTGCAGCCGAGCTCGTCAGTGCCATC GAGGAACTCGTGAAGAGCAAGATGGCCCTGGAGGATCGTCCCAGCTCCCTCCTCGTGGAC CAGGGAGACAGCAGCAGCCCCTCCTTCAACCCTTCAGACAACTCCCTCCTCTCATCCTCC TCGCCCATTGATGAGATGGAAGAAAGGAAATCCAGCTCTTTAAAGAGACGGCACTACGTC TTGCAAGAATTAGTGGAGACAGAGCGTGACTACGTGCGGGACCTCGGTTGTGTGGTTGAG GGCTACATGGCACTTATGAAAGAAGATGGTGTTCCTGATGACATGAAAGGGAAAGATAAG ATCGTGTTTGGCAACATCCATCAGATTTATGACTGGCACAGAGACTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCAAGTGGTTGACGAGCCCTGTGCGGCGGCTGAGCAGCGGCAAGGCCGATGGGCACGTG AAGAAGCTGGCGCACAAGCACAAGAAGAGCAGGGAGGTCCGCAAGAGCGCTGATGCCGGC TCACAGAAGGACTCGGACGACAGTGCAGCCACCCCACAGGACGAGACGGTAGAAGAGAGA GGCCGGAATGAGGGCCTGAGCAGTGGCACGCTCTCCAAATCCTCGTCATCGGGCATGCAG AGCTGTGGAGAGGAAGAAGGGGAGGAGGGGGCGGATGCCGTGCCCCTGCCCCCGCCCATG GCCATCCAGCAGCACAGCCTGCTGCAGCCGGACTCGCAGGATGACAAGGCCTCTTCACGG TTACTAGTCCGCCCCACCAGCTCCGAGACGCCCAGTGCAGCCGAGCTCGTCAGTGCCATC GAGGAACTCGTGAAGAGCAAGATGGCCCTGGAGGATCGTCCCAGCTCCCTCCTCGTGGAC CAGGGAGACAGCAGCAGCCCCTCCTTCAACCCTTCAGACAACTCCCTCCTCTCATCCTCC TCGCCCATTGATGAGATGGAAGAAAGGAAATCCAGCTCTTTAAAGAGACGGCACTACGTC TTGCAAGAATTAGTGGAGACAGAGCGTGACTACGTGCGGGACCTCGGTTGTGTGGTTGAG GGCTACATGGCACTTATGAAAGAAGATGGTGTTCCTGATGACATGAAAGGGAAAGATAAG ATCGTGTTTGGCAACATCCATCAGATTTATGACTGGCACAGAGACTTT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 478-596, - strand, RNAz p=0.514989 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 478-596, - strand, RNAz p=0.514989 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 1-109, gnl|bosTau2|chr20 (34766228-34766336) | |
| 1-109, gnl|canFam2|chr34 (3320034-3319791) | |
| 1-109, gnl|danRer3|chr19 (58444290-58444537) | |
| 1-109, gnl|dasNov1|scaffold_27780 (6751-6502) | |
| 1-109, gnl|echTel1|scaffold_194931 (1420-1666) | |
| 1-109, gnl|fr1|chrUn (781413-781725) | |
| 1-109, gnl|galGal2|chr2 (76309759-76309521) | |
| 1-109, gnl|hg17|chr5 (14514109-14514353) | |
| 1-109, gnl|Hg17|chr5 (14514244-14514352) | |
| 1-109, gnl|loxAfr1|scaffold_17300 (11875-12121) | |
| 1-109, gnl|mm7|chr15 (27877321-27877074) | |
| 1-109, gnl|Mm7|chr15 (27877181-27877073) | |
| 1-109, gnl|monDom2|scaffold_4 (36375267-36375507) | |
| 1-109, gnl|oryCun1|scaffold_195912 (121959-122206) | |
| 1-109, gnl|panTro1|chr4 (14931325-14931567) | |
| 1-109, gnl|rheMac2|chr6 (14642231-14642475) | |
| 1-109, gnl|rn3|chr2 (79622871-79622624) | |
| 1-109, gnl|tetNig1|chr8 (4011500-4011268) | |
| 1-109, gnl|xenTro1|scaffold_4 (3396186-3396428) | |
| 176-349, gnl|bosTau2|chr20 (34768008-34768181) | |
| 176-349, gnl|canFam2|chr34 (3318643-3318425) | |
| 176-349, gnl|danRer3|chr19 (58445999-58446208) | |
| 176-349, gnl|dasNov1|scaffold_27780 (5013-4786) | |
| 176-349, gnl|echTel1|scaffold_194931 (3696-3904) | |
| 176-349, gnl|fr1|chrUn (781863-782062) | |
| 176-349, gnl|galGal2|chr2 (76308145-76307935) | |
| 176-349, gnl|hg17|chr5 (14515834-14516060) | |
| 176-349, gnl|Hg17|chr5 (14515862-14516035) | |
| 176-349, gnl|loxAfr1|scaffold_17300 (14849-15057) | |
| 176-349, gnl|mm7|chr15 (27876240-27876013) | |
| 176-349, gnl|Mm7|chr15 (27876206-27876033) | |
| 176-349, gnl|monDom2|scaffold_4 (36377163-36377388) | |
| 176-349, gnl|oryCun1|scaffold_195912 (123946-124163) | |
| 176-349, gnl|panTro1|chr4 (14933048-14933274) | |
| 176-349, gnl|rheMac2|chr6 (14643943-14644169) | |
| 176-349, gnl|rn3|chr2 (79621800-79621581) | |
| 176-349, gnl|tetNig1|chr8 (4011109-4010932) | |
| 176-349, gnl|xenTro1|scaffold_4 (3398826-3399046) | |
| 444-596, gnl|bosTau2|chr20 (34778314-34778466) | |
| 444-596, gnl|Hg17|chr5 (14524426-14524578) | |
| 444-596, gnl|Mm7|chr15 (27871158-27871006) | |
| 656-764, gnl|bosTau2|chr20 (34781670-34781778) | |
| 656-764, gnl|canFam2|chr34 (3307501-3307369) | |
| 656-764, gnl|danRer3|chr19 (58456907-58457019) | |
| 656-764, gnl|dasNov1|scaffold_24623 (17273-17145) | |
| 656-764, gnl|echTel1|scaffold_241128 (12329-12218) | |
| 656-764, gnl|fr1|chrUn (784647-784769) | |
| 656-764, gnl|galGal2|chr2 (76300026-76299895) | |
| 656-764, gnl|hg17|chr5 (14527090-14527221) | |
| 656-764, gnl|Hg17|chr5 (14527098-14527206) | |
| 656-764, gnl|loxAfr1|scaffold_37133 (8177-8047) | |
| 656-764, gnl|mm7|chr15 (27867196-27867068) | |
| 656-764, gnl|Mm7|chr15 (27867186-27867078) | |
| 656-764, gnl|monDom2|scaffold_4 (36391416-36391540) | |
| 656-764, gnl|oryCun1|scaffold_200272 (57477-57596) | |
| 656-764, gnl|panTro1|chr4 (14944346-14944477) | |
| 656-764, gnl|rheMac2|chr6 (14655460-14655591) | |
| 656-764, gnl|rn3|chr2 (79611559-79611431) | |
| 656-764, gnl|tetNig1|chr8 (4009410-4009295) | |
| 656-764, gnl|xenTro1|scaffold_4 (3411294-3411411) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-109, gnl|bosTau2|chr20 (34766228-34766336) | |
| 1-109, gnl|canFam2|chr34 (3320034-3319791) | |
| 1-109, gnl|danRer3|chr19 (58444290-58444537) | |
| 1-109, gnl|dasNov1|scaffold_27780 (6751-6502) | |
| 1-109, gnl|echTel1|scaffold_194931 (1420-1666) | |
| 1-109, gnl|fr1|chrUn (781413-781725) | |
| 1-109, gnl|galGal2|chr2 (76309759-76309521) | |
| 1-109, gnl|hg17|chr5 (14514109-14514353) | |
| 1-109, gnl|Hg17|chr5 (14514244-14514352) | |
| 1-109, gnl|loxAfr1|scaffold_17300 (11875-12121) | |
| 1-109, gnl|mm7|chr15 (27877321-27877074) | |
| 1-109, gnl|Mm7|chr15 (27877181-27877073) | |
| 1-109, gnl|monDom2|scaffold_4 (36375267-36375507) | |
| 1-109, gnl|oryCun1|scaffold_195912 (121959-122206) | |
| 1-109, gnl|panTro1|chr4 (14931325-14931567) | |
| 1-109, gnl|rheMac2|chr6 (14642231-14642475) | |
| 1-109, gnl|rn3|chr2 (79622871-79622624) | |
| 1-109, gnl|tetNig1|chr8 (4011500-4011268) | |
| 1-109, gnl|xenTro1|scaffold_4 (3396186-3396428) | |
| 176-349, gnl|bosTau2|chr20 (34768008-34768181) | |
| 176-349, gnl|canFam2|chr34 (3318643-3318425) | |
| 176-349, gnl|danRer3|chr19 (58445999-58446208) | |
| 176-349, gnl|dasNov1|scaffold_27780 (5013-4786) | |
| 176-349, gnl|echTel1|scaffold_194931 (3696-3904) | |
| 176-349, gnl|fr1|chrUn (781863-782062) | |
| 176-349, gnl|galGal2|chr2 (76308145-76307935) | |
| 176-349, gnl|hg17|chr5 (14515834-14516060) | |
| 176-349, gnl|Hg17|chr5 (14515862-14516035) | |
| 176-349, gnl|loxAfr1|scaffold_17300 (14849-15057) | |
| 176-349, gnl|mm7|chr15 (27876240-27876013) | |
| 176-349, gnl|Mm7|chr15 (27876206-27876033) | |
| 176-349, gnl|monDom2|scaffold_4 (36377163-36377388) | |
| 176-349, gnl|oryCun1|scaffold_195912 (123946-124163) | |
| 176-349, gnl|panTro1|chr4 (14933048-14933274) | |
| 176-349, gnl|rheMac2|chr6 (14643943-14644169) | |
| 176-349, gnl|rn3|chr2 (79621800-79621581) | |
| 176-349, gnl|tetNig1|chr8 (4011109-4010932) | |
| 176-349, gnl|xenTro1|scaffold_4 (3398826-3399046) | |
| 444-596, gnl|bosTau2|chr20 (34778314-34778466) | |
| 444-596, gnl|Hg17|chr5 (14524426-14524578) | |
| 444-596, gnl|Mm7|chr15 (27871158-27871006) | |
| 656-764, gnl|bosTau2|chr20 (34781670-34781778) | |
| 656-764, gnl|canFam2|chr34 (3307501-3307369) | |
| 656-764, gnl|danRer3|chr19 (58456907-58457019) | |
| 656-764, gnl|dasNov1|scaffold_24623 (17273-17145) | |
| 656-764, gnl|echTel1|scaffold_241128 (12329-12218) | |
| 656-764, gnl|fr1|chrUn (784647-784769) | |
| 656-764, gnl|galGal2|chr2 (76300026-76299895) | |
| 656-764, gnl|hg17|chr5 (14527090-14527221) | |
| 656-764, gnl|Hg17|chr5 (14527098-14527206) | |
| 656-764, gnl|loxAfr1|scaffold_37133 (8177-8047) | |
| 656-764, gnl|mm7|chr15 (27867196-27867068) | |
| 656-764, gnl|Mm7|chr15 (27867186-27867078) | |
| 656-764, gnl|monDom2|scaffold_4 (36391416-36391540) | |
| 656-764, gnl|oryCun1|scaffold_200272 (57477-57596) | |
| 656-764, gnl|panTro1|chr4 (14944346-14944477) | |
| 656-764, gnl|rheMac2|chr6 (14655460-14655591) | |
| 656-764, gnl|rn3|chr2 (79611559-79611431) | |
| 656-764, gnl|tetNig1|chr8 (4009410-4009295) | |
| 656-764, gnl|xenTro1|scaffold_4 (3411294-3411411) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |