Non-Coding RNA Search

Ss1.1-Pig1-58J04.5

Sequence:


               
               GATTCAGAAAAACCAGGGATCTTTAATGCCTCTCCAGCTTCTGCAGTGCATTGTTGATGA
GGATTCGCCCGTCCTTCCCGTTGGAGAGTTCTCCGAACCATTTGTACATTTCATCACTCA
GTGCATGCGAAAACAGCCAAAAGAAAGGCCAGCACCTGAGGAACTGATGGGCCACCCATT
CATCATGCAGTTCAATGACGGAAATTCCACCGTGGTGTCCATGTGGGTGTGCAGGGCGCT
GGAGGAGAGGCGGAGCCAGCAGGGGCCCCCCTGAGACTGCAGCAGGATGCTGAAAGCCCA
GGACTTGTCACCAAGGGGAAGATCCACCTCGTGCCCTTCTCCGTTTGCTGTCTGCACCAG
AAGAGCTTTGCTGGACCCAGGCCTCTCTGCTCTCACCTTCAACTCTGCTGCAGACGACCT
TGCCTAGGGAGCCCTCGAGGGCAGCTAGCCCCTGCCGGAGCAAGCCCTCTCCCCCACCTC
AGGTCCAGAGAGGCCTGACTGGCAGGGTGGGTAGAGGGGTTGGGGCATTGAGAAGCGAGG
CCCCTGTGCCCTTGTCCCTCTGCCTTTTTCCCAGTCTTCTTTGTAAAGGATCAGGCTCCG
TCAGCGACACTGATGGGAATAAAAATATTACTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCAGAAAAACCAGGGATCTTTAATGCCTCTCCAGCTTCTGCAGTGCATTGTTGATGA
GGATTCGCCCGTCCTTCCCGTTGGAGAGTTCTCCGAACCATTTGTACATTTCATCACTCA
GTGCATGCGAAAACAGCCAAAAGAAAGGCCAGCACCTGAGGAACTGATGGGCCACCCATT
CATCATGCAGTTCAATGACGGAAATTCCACCGTGGTGTCCATGTGGGTGTGCAGGGCGCT
GGAGGAGAGGCGGAGCCAGCAGGGGCCCCCCTGAGACTGCAGCAGGATGCTGAAAGCCCA
GGACTTGTCACCAAGGGGAAGATCCACCTCGTGCCCTTCTCCGTTTGCTGTCTGCACCAG
AAGAGCTTTGCTGGACCCAGGCCTCTCTGCTCTCACCTTCAACTCTGCTGCAGACGACCT
TGCCTAGGGAGCCCTCGAGGGCAGCTAGCCCCTGCCGGAGCAAGCCCTCTCCCCCACCTC
AGGTCCAGAGAGGCCTGACTGGCAGGGTGGGTAGAGGGGTTGGGGCATTGAGAAGCGAGG
CCCCTGTGCCCTTGTCCCTCTGCCTTTTTCCCAGTCTTCTTTGTAAAGGATCAGGCTCCG
TCAGCGACACTGATGGGAATAAAAATATTACTGCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               406-521, - strand, RNAz p=0.624269

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               406-521, - strand, RNAz p=0.624269

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               504-580, + strand, RNAmicro p=0.955897

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               504-580, + strand, RNAmicro p=0.955897

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               169-636, gnl|bosTau2|chr10 (7642548-7642999)
               

               
               169-636, gnl|Hg17|chr15 (65886037-65886499)
               

               
               169-636, gnl|Mm7|chr9 (63192546-63192127)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               169-636, gnl|bosTau2|chr10 (7642548-7642999)
               

               
               169-636, gnl|Hg17|chr15 (65886037-65886499)
               

               
               169-636, gnl|Mm7|chr9 (63192546-63192127)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

	169-636, gnl\|bosTau2\|chr10 (7642548-7642999)
	169-636, gnl\|Hg17\|chr15 (65886037-65886499)
	169-636, gnl\|Mm7\|chr9 (63192546-63192127)