Non-Coding RNA Search

Ss1.1-Pig1-59B04.5

Sequence:


               
               GAAGACAAAGAGTTGAAGATCAACCGCTGGTCTCTCAGTTGCCTTCCTCACTGCACCCTA
GCCCATCACACCTCAACCTTGGTTTCCACATTCACTCCTCTCTCCCCATCCTCCAACCTC
AGGTCCACCATGCTTGCTGTCCAAACCCCCCTCCAAGTCCGTGTCCCCCCTTTTTGGTTC
CCTCCTGCCCCCTCTCCCTGCTTCCAGATCCCATCACTTATACCTCATCTGAGATCTGAG
AACCAAATGTGACCCAGGTACCTGCAAGAGAGAAGCCAGGCAAGTGAGACCTGGGGGGCA
AGCCAGGAAAGAACACCCCTTTCCTTAATTCCTCTTCTTTCTAACTCACCTAGGCCAAGA
CAGGACACCCGAAGACCAGACTTTCCTAGGTTCCTAAAGGATACAGAAGCAGCAGGAAGA
GGTGGAGACTCCATTAGGGACGTAGATCATCAGCCTCCAGCTCCTCTTTCCAGCCTGAGA
TGCCCTCAGGGTATCTCAGTCCAAAGAAATTGGACTCCCTATCCGAACTGGACAGTGCTA
TGGCTATAGCATAAGTGAACAAATAATGACTCTTCCTCTGTAGCCACTGTCCAATGCCTC
TGTTCCCTCCTAGCGCATTGAAGACATGCTGTCTGCTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGGGGGGGGGGCCTTTTTAAATTTTCCTGGGGGGGGCCAAATTTTCCCCCCCC
CCTTTTTTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGACAAAGAGTTGAAGATCAACCGCTGGTCTCTCAGTTGCCTTCCTCACTGCACCCTA
GCCCATCACACCTCAACCTTGGTTTCCACATTCACTCCTCTCTCCCCATCCTCCAACCTC
AGGTCCACCATGCTTGCTGTCCAAACCCCCCTCCAAGTCCGTGTCCCCCCTTTTTGGTTC
CCTCCTGCCCCCTCTCCCTGCTTCCAGATCCCATCACTTATACCTCATCTGAGATCTGAG
AACCAAATGTGACCCAGGTACCTGCAAGAGAGAAGCCAGGCAAGTGAGACCTGGGGGGCA
AGCCAGGAAAGAACACCCCTTTCCTTAATTCCTCTTCTTTCTAACTCACCTAGGCCAAGA
CAGGACACCCGAAGACCAGACTTTCCTAGGTTCCTAAAGGATACAGAAGCAGCAGGAAGA
GGTGGAGACTCCATTAGGGACGTAGATCATCAGCCTCCAGCTCCTCTTTCCAGCCTGAGA
TGCCCTCAGGGTATCTCAGTCCAAAGAAATTGGACTCCCTATCCGAACTGGACAGTGCTA
TGGCTATAGCATAAGTGAACAAATAATGACTCTTCCTCTGTAGCCACTGTCCAATGCCTC
TGTTCCCTCCTAGCGCATTGAAGACATGCTGTCTGCTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGGGGGGGGGGCCTTTTTAAATTTTCCTGGGGGGGGCCAAATTTTCCCCCCCC
CCTTTTTTTTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               375-556, - strand, RNAz p=0.99722

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               375-556, - strand, RNAz p=0.99722

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-640, gnl|bosTau2|chr19 (15285974-15285304)
               

               
               3-640, gnl|Hg17|chr17 (7771478-7772150)
               

               
               3-640, gnl|Mm7|chr11 (69410071-69409437)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-640, gnl|bosTau2|chr19 (15285974-15285304)
               

               
               3-640, gnl|Hg17|chr17 (7771478-7772150)
               

               
               3-640, gnl|Mm7|chr11 (69410071-69409437)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	3-640, gnl\|bosTau2\|chr19 (15285974-15285304)
	3-640, gnl\|Hg17\|chr17 (7771478-7772150)
	3-640, gnl\|Mm7\|chr11 (69410071-69409437)