Ss1.1-Pig1-59E08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCTTTGAGGGCGACCTCAAGTGGCACCACCACGACATCACCTACTGGATCCAAAACTAC TCGGAAGACTTGCCGCGCGATGTGATTGACGACGCCTTTGCCCGCGCCTTCGCGCTCTGG AGCGAGGTGACGCCGCTCAATTTCACTCGCGTATACGGCCCCAACGCCGACATCGTTATC CAGTTTGGTGTTAAGGAGCACGGAGATGGGTATCCCTTCGATGGGAAGGACGGGCTCCTG GCACACGCCTTCCCTCCTGGCCCGGGCATTCAAGGAGACGCCCACTTCGACGATGAAGAG TTGTGGTCTCTGGGCAAAGGCGTCGTGGTTCCGACCTACTTCGGAAACGCAAAAGGCGCA GCCTGCCACTTCCCCTTCACCTTCGAGGGCCGCTCCTATTCCGCCTGCACCACGGACGGC CGCTCCGACGACATGCTCTGGTGCAGCACCACGGCCGACTATGACACCGACCGCCAGTTT GGCTTCTGCCCTAGCGAGAGACTCTTCACTCGGGACGGTAACGCGGACGGCAAGCCCTGC GTGTTTCCATTCACCTTCGAGGGCCGCTCCTACTCCTCCTGCACCACCGACGGCCGCTCA GACGGCTACCGCTGGTGCGGCACCACTGCCAACTACGACCAGGACAAGCTTTATGGCTTC TGCCCTACCCGAGCTGACTCGACGGTGACGGGAGGCAACTCGGCGGGGGACCTGTGCGTC TTCCCCTTCACCTTCCTGGGCAAGGAGTACTCGGCCTGCACCAGAGAGGGCCGCAGTGAT GGGCACCTCTGGTGTGCCACCACCTCGAACTTCGACAAGGACAAGAAGTGGGGCTTCTGC CCGGACCAAGGCTACAGCCTGTTCCTTGTGGCGGCGCACGAGTTCGGCCACGCATTGGGC TTAGATCACTCAACCGTGCCAGAGGCGCTCATGTACCCCATGTACAGCTTCACTGAGGAG CACCCCCTGCATGAGGACGATGTGCGGGGCATCCAGTATCTGTATGGTTCTCGCCCTAAA CCTGAACCCCGGCCTCCAACCACCACCACAGCTGAACCCCAGTCCACCGTTCCCCCCACG GTCTGCGTCACCGGGCCTCCCACTACCCGCCCCTCTGAGCGCTCCACTGCTGGCCCCACA GGCCCTCCTTCAGCTGGCCCCACGGGTCCTCCCACTGCTGGCCCTTCTGCAGCCCCTACG GTGTCCTTGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCTTTGAGGGCGACCTCAAGTGGCACCACCACGACATCACCTACTGGATCCAAAACTAC TCGGAAGACTTGCCGCGCGATGTGATTGACGACGCCTTTGCCCGCGCCTTCGCGCTCTGG AGCGAGGTGACGCCGCTCAATTTCACTCGCGTATACGGCCCCAACGCCGACATCGTTATC CAGTTTGGTGTTAAGGAGCACGGAGATGGGTATCCCTTCGATGGGAAGGACGGGCTCCTG GCACACGCCTTCCCTCCTGGCCCGGGCATTCAAGGAGACGCCCACTTCGACGATGAAGAG TTGTGGTCTCTGGGCAAAGGCGTCGTGGTTCCGACCTACTTCGGAAACGCAAAAGGCGCA GCCTGCCACTTCCCCTTCACCTTCGAGGGCCGCTCCTATTCCGCCTGCACCACGGACGGC CGCTCCGACGACATGCTCTGGTGCAGCACCACGGCCGACTATGACACCGACCGCCAGTTT GGCTTCTGCCCTAGCGAGAGACTCTTCACTCGGGACGGTAACGCGGACGGCAAGCCCTGC GTGTTTCCATTCACCTTCGAGGGCCGCTCCTACTCCTCCTGCACCACCGACGGCCGCTCA GACGGCTACCGCTGGTGCGGCACCACTGCCAACTACGACCAGGACAAGCTTTATGGCTTC TGCCCTACCCGAGCTGACTCGACGGTGACGGGAGGCAACTCGGCGGGGGACCTGTGCGTC TTCCCCTTCACCTTCCTGGGCAAGGAGTACTCGGCCTGCACCAGAGAGGGCCGCAGTGAT GGGCACCTCTGGTGTGCCACCACCTCGAACTTCGACAAGGACAAGAAGTGGGGCTTCTGC CCGGACCAAGGCTACAGCCTGTTCCTTGTGGCGGCGCACGAGTTCGGCCACGCATTGGGC TTAGATCACTCAACCGTGCCAGAGGCGCTCATGTACCCCATGTACAGCTTCACTGAGGAG CACCCCCTGCATGAGGACGATGTGCGGGGCATCCAGTATCTGTATGGTTCTCGCCCTAAA CCTGAACCCCGGCCTCCAACCACCACCACAGCTGAACCCCAGTCCACCGTTCCCCCCACG GTCTGCGTCACCGGGCCTCCCACTACCCGCCCCTCTGAGCGCTCCACTGCTGGCCCCACA GGCCCTCCTTCAGCTGGCCCCACGGGTCCTCCCACTGCTGGCCCTTCTGCAGCCCCTACG GTGTCCTTGGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1116-1206, - strand, RNAz p=0.878196 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1116-1206, - strand, RNAz p=0.878196 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 47-193, gnl|bosTau2|chr13 (54782264-54782410) | |
| 47-193, gnl|canFam2|chr24 (36251900-36252056) | |
| 47-193, gnl|danRer3|chrNA (191102141-191102297) | |
| 47-193, gnl|dasNov1|scaffold_35282 (210-53) | |
| 47-193, gnl|echTel1|scaffold_324580 (95916-95751) | |
| 47-193, gnl|fr1|chrUn (16801082-16801225) | |
| 47-193, gnl|galGal2|chr20 (10109980-10110136) | |
| 47-193, gnl|hg17|chr20 (44072527-44072683) | |
| 47-193, gnl|Hg17|chr20 (44072528-44072674) | |
| 47-193, gnl|loxAfr1|scaffold_122104 (1533-1359) | |
| 47-193, gnl|mm7|chr2 (164689935-164690091) | |
| 47-193, gnl|Mm7|chr2 (164689936-164690082) | |
| 47-193, gnl|monDom2|scaffold_35 (25345897-25346053) | |
| 47-193, gnl|oryCun1|scaffold_203494 (7740-7584) | |
| 47-193, gnl|panTro1|chr21 (46596826-46596982) | |
| 47-193, gnl|rheMac2|chr10 (18475974-18475818) | |
| 47-193, gnl|rn3|chr3 (155892553-155892709) | |
| 47-193, gnl|tetNig1|chr5 (1262517-1262660) | |
| 47-193, gnl|xenTro1|scaffold_131 (1435411-1435255) | |
| 196-323, gnl|bosTau2|chr13 (54782711-54782838) | |
| 196-323, gnl|canFam2|chr24 (36252327-36252476) | |
| 196-323, gnl|danRer3|chr7 (23575808-23575652) | |
| 196-323, gnl|dasNov1|scaffold_6545 (52045-51906) | |
| 196-323, gnl|echTel1|scaffold_324580 (95596-95447) | |
| 196-323, gnl|fr1|chrUn (16801747-16801896) | |
| 196-323, gnl|galGal2|chr20 (10110317-10110456) | |
| 196-323, gnl|hg17|chr20 (44072954-44073103) | |
| 196-323, gnl|Hg17|chr20 (44072967-44073094) | |
| 196-323, gnl|loxAfr1|scaffold_122104 (1098-949) | |
| 196-323, gnl|mm7|chr2 (164690359-164690498) | |
| 196-323, gnl|Mm7|chr2 (164690362-164690489) | |
| 196-323, gnl|monDom2|scaffold_35 (25346153-25346292) | |
| 196-323, gnl|oryCun1|scaffold_203494 (7364-7222) | |
| 196-323, gnl|panTro1|chr21 (46597253-46597402) | |
| 196-323, gnl|rheMac2|chr10 (18475548-18475399) | |
| 196-323, gnl|rn3|chr3 (155893088-155893237) | |
| 196-323, gnl|tetNig1|chr5 (1263757-1263889) | |
| 196-323, gnl|xenTro1|scaffold_131 (1435113-1434978) | |
| 325-500, gnl|bosTau2|chr13 (54782928-54783103) | |
| 325-500, gnl|canFam2|chr24 (36252547-36252739) | |
| 325-500, gnl|danRer3|chr7 (23575563-23575372) | |
| 325-500, gnl|dasNov1|scaffold_6545 (51713-51505) | |
| 325-500, gnl|echTel1|scaffold_324580 (95380-95188) | |
| 325-500, gnl|fr1|chrUn (16802505-16802696) | |
| 325-500, gnl|galGal2|chr20 (10110527-10110718) | |
| 325-500, gnl|hg17|chr20 (44073178-44073370) | |
| 325-500, gnl|Hg17|chr20 (44073188-44073363) | |
| 325-500, gnl|loxAfr1|scaffold_122104 (877-685) | |
| 325-500, gnl|mm7|chr2 (164690590-164690782) | |
| 325-500, gnl|Mm7|chr2 (164690600-164690775) | |
| 325-500, gnl|monDom2|scaffold_35 (25346425-25346617) | |
| 325-500, gnl|oryCun1|scaffold_203494 (7149-6969) | |
| 325-500, gnl|panTro1|chr21 (46597477-46597669) | |
| 325-500, gnl|rheMac2|chr10 (18475326-18475134) | |
| 325-500, gnl|rn3|chr3 (155893329-155893521) | |
| 325-500, gnl|tetNig1|chr5 (1264552-1264743) | |
| 325-500, gnl|xenTro1|scaffold_131 (1434587-1434391) | |
| 659-851, gnl|bosTau2|chr13 (54783876-54784067) | |
| 659-851, gnl|Hg17|chr20 (44074168-44074360) | |
| 659-851, gnl|Mm7|chr2 (164691466-164691656) | |
| 1006-1206, gnl|bosTau2|chr13 (54785095-54785304) | |
| 1006-1206, gnl|Hg17|chr20 (44075300-44075494) | |
| 1006-1206, gnl|Mm7|chr2 (164693073-164693321) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-193, gnl|bosTau2|chr13 (54782264-54782410) | |
| 47-193, gnl|canFam2|chr24 (36251900-36252056) | |
| 47-193, gnl|danRer3|chrNA (191102141-191102297) | |
| 47-193, gnl|dasNov1|scaffold_35282 (210-53) | |
| 47-193, gnl|echTel1|scaffold_324580 (95916-95751) | |
| 47-193, gnl|fr1|chrUn (16801082-16801225) | |
| 47-193, gnl|galGal2|chr20 (10109980-10110136) | |
| 47-193, gnl|hg17|chr20 (44072527-44072683) | |
| 47-193, gnl|Hg17|chr20 (44072528-44072674) | |
| 47-193, gnl|loxAfr1|scaffold_122104 (1533-1359) | |
| 47-193, gnl|mm7|chr2 (164689935-164690091) | |
| 47-193, gnl|Mm7|chr2 (164689936-164690082) | |
| 47-193, gnl|monDom2|scaffold_35 (25345897-25346053) | |
| 47-193, gnl|oryCun1|scaffold_203494 (7740-7584) | |
| 47-193, gnl|panTro1|chr21 (46596826-46596982) | |
| 47-193, gnl|rheMac2|chr10 (18475974-18475818) | |
| 47-193, gnl|rn3|chr3 (155892553-155892709) | |
| 47-193, gnl|tetNig1|chr5 (1262517-1262660) | |
| 47-193, gnl|xenTro1|scaffold_131 (1435411-1435255) | |
| 196-323, gnl|bosTau2|chr13 (54782711-54782838) | |
| 196-323, gnl|canFam2|chr24 (36252327-36252476) | |
| 196-323, gnl|danRer3|chr7 (23575808-23575652) | |
| 196-323, gnl|dasNov1|scaffold_6545 (52045-51906) | |
| 196-323, gnl|echTel1|scaffold_324580 (95596-95447) | |
| 196-323, gnl|fr1|chrUn (16801747-16801896) | |
| 196-323, gnl|galGal2|chr20 (10110317-10110456) | |
| 196-323, gnl|hg17|chr20 (44072954-44073103) | |
| 196-323, gnl|Hg17|chr20 (44072967-44073094) | |
| 196-323, gnl|loxAfr1|scaffold_122104 (1098-949) | |
| 196-323, gnl|mm7|chr2 (164690359-164690498) | |
| 196-323, gnl|Mm7|chr2 (164690362-164690489) | |
| 196-323, gnl|monDom2|scaffold_35 (25346153-25346292) | |
| 196-323, gnl|oryCun1|scaffold_203494 (7364-7222) | |
| 196-323, gnl|panTro1|chr21 (46597253-46597402) | |
| 196-323, gnl|rheMac2|chr10 (18475548-18475399) | |
| 196-323, gnl|rn3|chr3 (155893088-155893237) | |
| 196-323, gnl|tetNig1|chr5 (1263757-1263889) | |
| 196-323, gnl|xenTro1|scaffold_131 (1435113-1434978) | |
| 325-500, gnl|bosTau2|chr13 (54782928-54783103) | |
| 325-500, gnl|canFam2|chr24 (36252547-36252739) | |
| 325-500, gnl|danRer3|chr7 (23575563-23575372) | |
| 325-500, gnl|dasNov1|scaffold_6545 (51713-51505) | |
| 325-500, gnl|echTel1|scaffold_324580 (95380-95188) | |
| 325-500, gnl|fr1|chrUn (16802505-16802696) | |
| 325-500, gnl|galGal2|chr20 (10110527-10110718) | |
| 325-500, gnl|hg17|chr20 (44073178-44073370) | |
| 325-500, gnl|Hg17|chr20 (44073188-44073363) | |
| 325-500, gnl|loxAfr1|scaffold_122104 (877-685) | |
| 325-500, gnl|mm7|chr2 (164690590-164690782) | |
| 325-500, gnl|Mm7|chr2 (164690600-164690775) | |
| 325-500, gnl|monDom2|scaffold_35 (25346425-25346617) | |
| 325-500, gnl|oryCun1|scaffold_203494 (7149-6969) | |
| 325-500, gnl|panTro1|chr21 (46597477-46597669) | |
| 325-500, gnl|rheMac2|chr10 (18475326-18475134) | |
| 325-500, gnl|rn3|chr3 (155893329-155893521) | |
| 325-500, gnl|tetNig1|chr5 (1264552-1264743) | |
| 325-500, gnl|xenTro1|scaffold_131 (1434587-1434391) | |
| 659-851, gnl|bosTau2|chr13 (54783876-54784067) | |
| 659-851, gnl|Hg17|chr20 (44074168-44074360) | |
| 659-851, gnl|Mm7|chr2 (164691466-164691656) | |
| 1006-1206, gnl|bosTau2|chr13 (54785095-54785304) | |
| 1006-1206, gnl|Hg17|chr20 (44075300-44075494) | |
| 1006-1206, gnl|Mm7|chr2 (164693073-164693321) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| nca (0.136874) | |
| nbm (0.0993246) |