Non-Coding RNA Search

Ss1.1-Pig1-59G07.5

Sequence:


               
               TGGCGGCCTCAGCGGTGTCCGAGAAAGGCCGGCAAACTCCTGCCTTTGGCGGCGGCCGTT
GTGTGGCATCTGCGGCAACGGTGAGACGCAGACCTGCAGGTTGAACCTTAAAAGTGACGA
ATGGAGCCTTGAAATTAAAATGTTGGCTCTAGACTTGAAAAAAGACCCATGAAAACCGTC
ATCCGAAAACGGTACAGTGTCAGCCTCAGTTTGAGGCCGAAAAGGAAGCTCCGGAAGAAG
ACGCTGGCAGCAGTACCCCGCTGGCTGCCCTGGACCCAAGGCAGAATTTCCCTTGTGTCT
GCAGTGTGAGGCAGAACGGTTTTGCCTGGAGCAAGTGAAACGATTCCTCTCCTGCTGTTA
CTAGTTATCTCCCTGTGATGCCAGACGGGATCAGCACAGCCCCAGGAGCTAGTTGCTACT
GCCTATAAGATACCCTCCCCCACCAAAGAGAATCATTTAAGGGTTTAGGAGTTGCTGTTG
TGGCCCAGTGGGCTAAGAACCTGACATAGTCTCTGTGAGGATTCGAGTTTGATCCCTGGC
CTTGCTCAGTGGCTGGGCATCCAGTGTTGCCCTCATAGACCCTGGTCCTGGTGCACTGTC
CCTCTGAACCTTAAAGACAAGTGCCGCCACTGCCCTGTCAGGCTCTAGGTCCCCCAGTTT
AATGGCTCAGAGGGCACAGGCTGTTAGGGGGGCAGAAATGGGCAAGTGGCCTGGATTTGG
TTTATGCTCTTGTTGTGGGATGAAAAGAGTGCTTGTCACACATTTCAAGAAAATGAATGG
GCTCTTTGAAACAGCCAGGAATGGCCGACGTATGCCCACTGTGGCAGCGAGACTGCTCTG
GCATTCTGACCTCTTGCCCCCTCTACCACATCCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGGCCTCAGCGGTGTCCGAGAAAGGCCGGCAAACTCCTGCCTTTGGCGGCGGCCGTT
GTGTGGCATCTGCGGCAACGGTGAGACGCAGACCTGCAGGTTGAACCTTAAAAGTGACGA
ATGGAGCCTTGAAATTAAAATGTTGGCTCTAGACTTGAAAAAAGACCCATGAAAACCGTC
ATCCGAAAACGGTACAGTGTCAGCCTCAGTTTGAGGCCGAAAAGGAAGCTCCGGAAGAAG
ACGCTGGCAGCAGTACCCCGCTGGCTGCCCTGGACCCAAGGCAGAATTTCCCTTGTGTCT
GCAGTGTGAGGCAGAACGGTTTTGCCTGGAGCAAGTGAAACGATTCCTCTCCTGCTGTTA
CTAGTTATCTCCCTGTGATGCCAGACGGGATCAGCACAGCCCCAGGAGCTAGTTGCTACT
GCCTATAAGATACCCTCCCCCACCAAAGAGAATCATTTAAGGGTTTAGGAGTTGCTGTTG
TGGCCCAGTGGGCTAAGAACCTGACATAGTCTCTGTGAGGATTCGAGTTTGATCCCTGGC
CTTGCTCAGTGGCTGGGCATCCAGTGTTGCCCTCATAGACCCTGGTCCTGGTGCACTGTC
CCTCTGAACCTTAAAGACAAGTGCCGCCACTGCCCTGTCAGGCTCTAGGTCCCCCAGTTT
AATGGCTCAGAGGGCACAGGCTGTTAGGGGGGCAGAAATGGGCAAGTGGCCTGGATTTGG
TTTATGCTCTTGTTGTGGGATGAAAAGAGTGCTTGTCACACATTTCAAGAAAATGAATGG
GCTCTTTGAAACAGCCAGGAATGGCCGACGTATGCCCACTGTGGCAGCGAGACTGCTCTG
GCATTCTGACCTCTTGCCCCCTCTACCACATCCTGA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               192-358, gnl|bosTau2|chr15 (49683135-49682968)
               


               
               663-876, gnl|bosTau2|chr19 (49122507-49122293)
               

               
               663-876, gnl|canFam2|chr9 (7166483-7166049)
               

               
               663-876, gnl|hg17|chr17 (72069539-72069929)
               

               
               663-876, gnl|Hg17|chr17 (72069537-72069747)
               

               
               663-876, gnl|loxAfr1|scaffold_163024 (400-797)
               

               
               663-876, gnl|mm7|chr11 (116783846-116784149)
               

               
               663-876, gnl|Mm7|chr11 (116783845-116784032)
               

               
               663-876, gnl|panTro1|chr19 (75437830-75438220)
               

               
               663-876, gnl|rheMac2|chr16 (71924324-71924690)
               

               
               663-876, gnl|rn3|chr10 (106805810-106806135)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               192-358, gnl|bosTau2|chr15 (49683135-49682968)
               


               
               663-876, gnl|bosTau2|chr19 (49122507-49122293)
               

               
               663-876, gnl|canFam2|chr9 (7166483-7166049)
               

               
               663-876, gnl|hg17|chr17 (72069539-72069929)
               

               
               663-876, gnl|Hg17|chr17 (72069537-72069747)
               

               
               663-876, gnl|loxAfr1|scaffold_163024 (400-797)
               

               
               663-876, gnl|mm7|chr11 (116783846-116784149)
               

               
               663-876, gnl|Mm7|chr11 (116783845-116784032)
               

               
               663-876, gnl|panTro1|chr19 (75437830-75438220)
               

               
               663-876, gnl|rheMac2|chr16 (71924324-71924690)
               

               
               663-876, gnl|rn3|chr10 (106805810-106806135)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	192-358, gnl\|bosTau2\|chr15 (49683135-49682968)

	663-876, gnl\|bosTau2\|chr19 (49122507-49122293)
	663-876, gnl\|canFam2\|chr9 (7166483-7166049)
	663-876, gnl\|hg17\|chr17 (72069539-72069929)
	663-876, gnl\|Hg17\|chr17 (72069537-72069747)
	663-876, gnl\|loxAfr1\|scaffold_163024 (400-797)
	663-876, gnl\|mm7\|chr11 (116783846-116784149)
	663-876, gnl\|Mm7\|chr11 (116783845-116784032)
	663-876, gnl\|panTro1\|chr19 (75437830-75438220)
	663-876, gnl\|rheMac2\|chr16 (71924324-71924690)
	663-876, gnl\|rn3\|chr10 (106805810-106806135)