Non-Coding RNA Search

Ss1.1-Pig1-59M22.5

Sequence:


               
               AGCAGGTCCTATCTCTAAATGTAGGTTTTATATTGTCATTGGTTGATGGGAACTTAAAAT
ACAAATAAAACTCTTACTATAGGGTTGAGCTTGTAGAGTAAAATAAGATCCCAAAGCCAG
GAAATGCATTCAGTTAGGTTCTCATACCAGTGCTACCTGCCTGCATCGTACATTCTGTAT
GTTAATATGTACATTTGTGCTACCTGAAAATCAAAAGACACAACAGGAGCTCTTGGCCAA
ACCTGTATTGATAAAGCAGGCAGCAAAACTCAGTGTTTTGGATTATCAGAAGCCTTCTTA
ATGTGCCCTTCCAGGCAACACTGAACTGTTGGTTATTATTTATCAGGGAGATGTGCCACT
GTGTGTCTTTCCTGCCCCACCCATCTCCTCCTCCGTCACCCGTTCCCTCCTCTCACCTTC
TTTTTTAAAGTCACCTATCTGGACCAGGCAGGAGGAGCCTAATGGATGGTCCTGGTGAAG
CAGTAATCCTGTTTCTTTCTCTTGGGTCCCCCAGAGGCAATAAAAGCATCTGGAGGAGAA
GAGTCAGGTGACTAACCTCTGCCTCTCTCCTCCAGTTATATGATCTAGTGGATGCAAACA
CAGCTAACCTCCCTGTCCTTGGGTTCTCTGGCTGAAGCTTGGCAAAGGAGTAATTCTTCC
TTTTTATGCATACAGTTTACCTTTCCGCCACCTGTATACTTTTTACCTCTCTTCATGCCT
TAGACATACGGCATAACTAAGTTTAAAATGCCCACTCCTTTCTGAGTCTGGTCTTGACAT
CCAGCTTCTGGCTGACTGACTATGGATGGTTCTTTCCCAGACTGAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGGTCCTATCTCTAAATGTAGGTTTTATATTGTCATTGGTTGATGGGAACTTAAAAT
ACAAATAAAACTCTTACTATAGGGTTGAGCTTGTAGAGTAAAATAAGATCCCAAAGCCAG
GAAATGCATTCAGTTAGGTTCTCATACCAGTGCTACCTGCCTGCATCGTACATTCTGTAT
GTTAATATGTACATTTGTGCTACCTGAAAATCAAAAGACACAACAGGAGCTCTTGGCCAA
ACCTGTATTGATAAAGCAGGCAGCAAAACTCAGTGTTTTGGATTATCAGAAGCCTTCTTA
ATGTGCCCTTCCAGGCAACACTGAACTGTTGGTTATTATTTATCAGGGAGATGTGCCACT
GTGTGTCTTTCCTGCCCCACCCATCTCCTCCTCCGTCACCCGTTCCCTCCTCTCACCTTC
TTTTTTAAAGTCACCTATCTGGACCAGGCAGGAGGAGCCTAATGGATGGTCCTGGTGAAG
CAGTAATCCTGTTTCTTTCTCTTGGGTCCCCCAGAGGCAATAAAAGCATCTGGAGGAGAA
GAGTCAGGTGACTAACCTCTGCCTCTCTCCTCCAGTTATATGATCTAGTGGATGCAAACA
CAGCTAACCTCCCTGTCCTTGGGTTCTCTGGCTGAAGCTTGGCAAAGGAGTAATTCTTCC
TTTTTATGCATACAGTTTACCTTTCCGCCACCTGTATACTTTTTACCTCTCTTCATGCCT
TAGACATACGGCATAACTAAGTTTAAAATGCCCACTCCTTTCTGAGTCTGGTCTTGACAT
CCAGCTTCTGGCTGACTGACTATGGATGGTTCTTTCCCAGACTGAGCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               295-567, - strand, RNAz p=0.989717
               

               
               710-828, - strand, RNAz p=0.95414

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-567, - strand, RNAz p=0.989717
               

               
               710-828, - strand, RNAz p=0.95414

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               100-828, gnl|bosTau2|chr18 (22959054-22958325)
               

               
               100-828, gnl|Hg17|chr16 (56753861-56753118)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-828, gnl|bosTau2|chr18 (22959054-22958325)
               

               
               100-828, gnl|Hg17|chr16 (56753861-56753118)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	295-567, - strand, RNAz p=0.989717
	710-828, - strand, RNAz p=0.95414

	100-828, gnl\|bosTau2\|chr18 (22959054-22958325)
	100-828, gnl\|Hg17\|chr16 (56753861-56753118)