Non-Coding RNA Search

Ss1.1-Pig1-60B01.5

Sequence:


               
               GATTCTTTGGTAATCCTGTGCATCAATGAGCTGCACAAATTCAGACCAGGACTGCAAGAA
TTCAGGCATGAGGACACTGTGCAGCAGGCTCGCACAGGCAGACCCAAGATGGACAGAACA
TTGGAATCCCTGAGACACATCATTGCCCAAGTCTTGCCTCATAGAGACCCGGCTCTTGTC
TTCAAAGACTTGAACGTTGTGTCAATGTTACAGGAATTTTGGGAAAGCAAGCAGCAACAG
AGGGCTGCGTTCCCAAGTGAAGGTGTGGTGGTCTATGAGTCGCTGCCATCTCCTGGACCA
CCCTTTGTGAGTTATGTGACCCTCCCAGGGGGAAGCTGTTTTGGCAACTTTCAGTGCTGC
TTAAGTAGAGCTGAGGCCAGACGGGATGCAGCTAAAGTGGCCCTAATCAACTCCCTCTTC
AATGAGCTGCCCTCTCGCAGGATCACCAAGGAATTCATTATGGAGAGTGTGCAGGAAGCA
GTTGCCTCCACCAGTGGCACTCTGGATGATGCAGATGACCCCAGCACCAGCATCGGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCTTTGGTAATCCTGTGCATCAATGAGCTGCACAAATTCAGACCAGGACTGCAAGAA
TTCAGGCATGAGGACACTGTGCAGCAGGCTCGCACAGGCAGACCCAAGATGGACAGAACA
TTGGAATCCCTGAGACACATCATTGCCCAAGTCTTGCCTCATAGAGACCCGGCTCTTGTC
TTCAAAGACTTGAACGTTGTGTCAATGTTACAGGAATTTTGGGAAAGCAAGCAGCAACAG
AGGGCTGCGTTCCCAAGTGAAGGTGTGGTGGTCTATGAGTCGCTGCCATCTCCTGGACCA
CCCTTTGTGAGTTATGTGACCCTCCCAGGGGGAAGCTGTTTTGGCAACTTTCAGTGCTGC
TTAAGTAGAGCTGAGGCCAGACGGGATGCAGCTAAAGTGGCCCTAATCAACTCCCTCTTC
AATGAGCTGCCCTCTCGCAGGATCACCAAGGAATTCATTATGGAGAGTGTGCAGGAAGCA
GTTGCCTCCACCAGTGGCACTCTGGATGATGCAGATGACCCCAGCACCAGCATCGGAGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61819823|ref|XP_615009.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61819823|ref|XP_615009.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-190, gnl|bosTau2|chr7 (60077125-60076936)
               

               
               1-190, gnl|Hg17|chr5 (96504146-96503955)
               

               
               1-190, gnl|Mm7|chr17 (15573948-15574137)
               


               
               191-354, gnl|bosTau2|chr7 (60058079-60057916)
               

               
               191-354, gnl|Hg17|chr5 (96486089-96485926)
               

               
               191-354, gnl|Mm7|chr17 (15598267-15598430)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-190, gnl|bosTau2|chr7 (60077125-60076936)
               

               
               1-190, gnl|Hg17|chr5 (96504146-96503955)
               

               
               1-190, gnl|Mm7|chr17 (15573948-15574137)
               


               
               191-354, gnl|bosTau2|chr7 (60058079-60057916)
               

               
               191-354, gnl|Hg17|chr5 (96486089-96485926)
               

               
               191-354, gnl|Mm7|chr17 (15598267-15598430)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-190, gnl\|bosTau2\|chr7 (60077125-60076936)
	1-190, gnl\|Hg17\|chr5 (96504146-96503955)
	1-190, gnl\|Mm7\|chr17 (15573948-15574137)

	191-354, gnl\|bosTau2\|chr7 (60058079-60057916)
	191-354, gnl\|Hg17\|chr5 (96486089-96485926)
	191-354, gnl\|Mm7\|chr17 (15598267-15598430)