Non-Coding RNA Search

Ss1.1-Pig1-60E06.5

Sequence:


               
               CAGGAGGTGAAGCGGCTCCACCAGACCAGCCGGGATGCGCTGGAGCAGCAGAAGCACATG
GATGCTTCTCACTTCGCTCTCCAGCACCAGCAGGCAGGGATCTCTGGCTCAGGGAGGGGT
TCAGAAGGCTGGACACTCACCGTTTGTCTTTGGTCCCCACAGAACATGTTTGGGATGTGG
AAGCCTATGGTGTTCTTGGCTCTTGCAGCTGTGGCTCTGTATGTGTTACCCAACATGCGA
CCGCAGGAGACAGAGTTCTGCCTCATGGAGTGATGGCGGGCCTGGGCCAGCCGAGAGGGC
AGATCCCCAGTGGCCACTACCCTCAGCTTTGGGCAGGACACACCGTGCCAGAGCCCCCGC
CCCACCCATATGTTCCACGTGTCCCCATCTCCTTAGCCTCAGCCACTCGGGCTGGAAAGG
CTTATGGGGAACTACTGGCTCCCATCTCCTGCCTCGTCTAAGGACCTAGGTTCCTTGTAA
TTAAATGTCAGCTGAATGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAGGTGAAGCGGCTCCACCAGACCAGCCGGGATGCGCTGGAGCAGCAGAAGCACATG
GATGCTTCTCACTTCGCTCTCCAGCACCAGCAGGCAGGGATCTCTGGCTCAGGGAGGGGT
TCAGAAGGCTGGACACTCACCGTTTGTCTTTGGTCCCCACAGAACATGTTTGGGATGTGG
AAGCCTATGGTGTTCTTGGCTCTTGCAGCTGTGGCTCTGTATGTGTTACCCAACATGCGA
CCGCAGGAGACAGAGTTCTGCCTCATGGAGTGATGGCGGGCCTGGGCCAGCCGAGAGGGC
AGATCCCCAGTGGCCACTACCCTCAGCTTTGGGCAGGACACACCGTGCCAGAGCCCCCGC
CCCACCCATATGTTCCACGTGTCCCCATCTCCTTAGCCTCAGCCACTCGGGCTGGAAAGG
CTTATGGGGAACTACTGGCTCCCATCTCCTGCCTCGTCTAAGGACCTAGGTTCCTTGTAA
TTAAATGTCAGCTGAATGAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               254-452, - strand, RNAz p=0.993805

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-452, - strand, RNAz p=0.993805

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               61-497, gnl|bosTau2|chr4 (50515087-50514660)
               

               
               61-497, gnl|Hg17|chr7 (128055704-128056131)
               

               
               61-497, gnl|Mm7|chr6 (29358670-29359092)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-497, gnl|bosTau2|chr4 (50515087-50514660)
               

               
               61-497, gnl|Hg17|chr7 (128055704-128056131)
               

               
               61-497, gnl|Mm7|chr6 (29358670-29359092)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hyp (0.42851)
               

               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               tes (0.207814)
               

               
               fhi (0.169578)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               tes (0.207814)
               

               
               fhi (0.169578)

	61-497, gnl\|bosTau2\|chr4 (50515087-50514660)
	61-497, gnl\|Hg17\|chr7 (128055704-128056131)
	61-497, gnl\|Mm7\|chr6 (29358670-29359092)

	hyp (0.42851)
	fcc (0.39557)
	fbs (0.350693)
	tes (0.207814)
	fhi (0.169578)