Ss1.1-Pig1-60G19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAATGGATCTGTGAATATGGAAATAAACGATGATGAAGAAATCCTAATGAAAAACAAG AGCTCCTTATGTTTGAAACCTGCAGAAACAGATTGCAGCTTATCAAGTGAAGAAACTACA GACGATAATATAACAGGTGAAATGATGAAGGAAGATGGAGAGGAAAACCTGGGAAATCAT GACAGCAGCTTGGTGCAGCCTGAATCACACTCCTCACGCAGCTCTCCAGAACCCCACTGG GAAGAAGGCCAAGAAGTTATCCCAACTTTCTTTAGTACCATGAACACCAGCTTTAGTGAC ATTGAACTTCTGGAAGACAGTGGCATTCCCACAGAAGCATTCTTAGCATCATGTTATGCT GTGGTTCCAGTATTAGACAAACTTGGCCCCACGGTGTTTGCTCCTGTTAAAATGGATCTA GTTGGAAATATTAAGAAGGTAAATCAGAAGTATATTACCAACAAGGAAGAGTTTACCACC CTCCAAAAGATAGTGCTGCATGAAGTGGAAGCCGACGTAGCCCAGGTTCGGAACTCAGCT ACAGAAGCCCTCTTGTGGCTGAAGAGAGGTCTCAAATTTTTGAAGGGCTTTTTGACAGAA GTGAAAAATGGAGAAAAGGACATCCAGACAGCCCTGAATAATGCGTATGGTAAAACATTA CGGCAGCACCATGGCTGGGTAGTTCGAGGGGTTTTTGCGTTAGCTCTGAGGGCAGCTCCA TCCTATGAAGATTTTGTGGCTGCGTTAACCATAAAGGAAGGCGACCACCAGAAAGCAGCT TTCAGTGTTGGGATGCAGAGGGACCTCAGCCTTTACCTCCCTGCCATGGAAAAGCAGCTG GCGATACTGGACACTTTATACGAGATCCACGGACTGGAGTCTGACGAGGTGGTATGACGA CTGCAGGGCAGTGCCGCCTTTTAACTTCAGGGAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAATGGATCTGTGAATATGGAAATAAACGATGATGAAGAAATCCTAATGAAAAACAAG AGCTCCTTATGTTTGAAACCTGCAGAAACAGATTGCAGCTTATCAAGTGAAGAAACTACA GACGATAATATAACAGGTGAAATGATGAAGGAAGATGGAGAGGAAAACCTGGGAAATCAT GACAGCAGCTTGGTGCAGCCTGAATCACACTCCTCACGCAGCTCTCCAGAACCCCACTGG GAAGAAGGCCAAGAAGTTATCCCAACTTTCTTTAGTACCATGAACACCAGCTTTAGTGAC ATTGAACTTCTGGAAGACAGTGGCATTCCCACAGAAGCATTCTTAGCATCATGTTATGCT GTGGTTCCAGTATTAGACAAACTTGGCCCCACGGTGTTTGCTCCTGTTAAAATGGATCTA GTTGGAAATATTAAGAAGGTAAATCAGAAGTATATTACCAACAAGGAAGAGTTTACCACC CTCCAAAAGATAGTGCTGCATGAAGTGGAAGCCGACGTAGCCCAGGTTCGGAACTCAGCT ACAGAAGCCCTCTTGTGGCTGAAGAGAGGTCTCAAATTTTTGAAGGGCTTTTTGACAGAA GTGAAAAATGGAGAAAAGGACATCCAGACAGCCCTGAATAATGCGTATGGTAAAACATTA CGGCAGCACCATGGCTGGGTAGTTCGAGGGGTTTTTGCGTTAGCTCTGAGGGCAGCTCCA TCCTATGAAGATTTTGTGGCTGCGTTAACCATAAAGGAAGGCGACCACCAGAAAGCAGCT TTCAGTGTTGGGATGCAGAGGGACCTCAGCCTTTACCTCCCTGCCATGGAAAAGCAGCTG GCGATACTGGACACTTTATACGAGATCCACGGACTGGAGTCTGACGAGGTGGTATGACGA CTGCAGGGCAGTGCCGCCTTTTAACTTCAGGGAATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 136-254, - strand, RNAz p=0.998214 | |
| 143-247, - strand, RNAz p=0.672309 | |
| 731-850, - strand, RNAz p=0.650939 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 136-254, - strand, RNAz p=0.998214 | |
| 143-247, - strand, RNAz p=0.672309 | |
| 731-850, - strand, RNAz p=0.650939 |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 136-290, gnl|bosTau2|chr4 (36875166-36875012) | |
| 136-290, gnl|canFam2|chr14 (45795796-45795966) | |
| 136-290, gnl|dasNov1|scaffold_12143 (1530-1361) | |
| 136-290, gnl|echTel1|scaffold_173873 (6464-6311) | |
| 136-290, gnl|galGal2|chr2 (33089854-33090007) | |
| 136-290, gnl|hg17|chr7 (29867514-29867682) | |
| 136-290, gnl|Hg17|chr7 (29867570-29867721) | |
| 136-290, gnl|loxAfr1|scaffold_32870 (35377-35545) | |
| 136-290, gnl|mm7|chr6 (54587394-54587562) | |
| 136-290, gnl|Mm7|chr6 (54587450-54587601) | |
| 136-290, gnl|oryCun1|scaffold_207221 (188893-189070) | |
| 136-290, gnl|panTro1|chr6 (30982501-30982669) | |
| 136-290, gnl|rheMac2|chr3 (96141706-96141538) | |
| 136-290, gnl|rn3|chr4 (83319610-83319777) | |
| 434-566, gnl|bosTau2|chr4 (36870599-36870467) | |
| 434-566, gnl|canFam2|chr14 (45800615-45800485) | |
| 434-566, gnl|canFam2|chr14 (45800477-45800567) | |
| 434-566, gnl|danRer3|chr16 (11947099-11947229) | |
| 434-566, gnl|danRer3|chr16 (11947236-11947147) | |
| 434-566, gnl|dasNov1|scaffold_131118 (1550-1425) | |
| 434-566, gnl|dasNov1|scaffold_131118 (1426-1503) | |
| 434-566, gnl|echTel1|scaffold_173873 (8-90) | |
| 434-566, gnl|echTel1|scaffold_173873 (98-8) | |
| 434-566, gnl|fr1|chrUn (103542036-103542166) | |
| 434-566, gnl|fr1|chrUn (103542174-103542084) | |
| 434-566, gnl|galGal2|chr2 (33092499-33092369) | |
| 434-566, gnl|galGal2|chr2 (33092361-33092451) | |
| 434-566, gnl|hg17|chr12 (43853536-43853666) | |
| 434-566, gnl|hg17|chr7 (29874746-29874836) | |
| 434-566, gnl|Hg17|chr7 (29874751-29874883) | |
| 434-566, gnl|loxAfr1|scaffold_8324 (50004-49893) | |
| 434-566, gnl|loxAfr1|scaffold_8324 (49885-49975) | |
| 434-566, gnl|mm7|chr17 (30795696-30795566) | |
| 434-566, gnl|mm7|chr6 (54593183-54593273) | |
| 434-566, gnl|Mm7|chr6 (54593188-54593320) | |
| 434-566, gnl|monDom2|scaffold_7 (90342236-90342366) | |
| 434-566, gnl|oryCun1|scaffold_207221 (193437-193307) | |
| 434-566, gnl|oryCun1|scaffold_207221 (193299-193389) | |
| 434-566, gnl|panTro1|chr10 (44468748-44468878) | |
| 434-566, gnl|panTro1|chr6 (30989667-30989757) | |
| 434-566, gnl|rheMac2|chr3 (96134786-96134916) | |
| 434-566, gnl|rheMac2|chr3 (96134924-96134834) | |
| 434-566, gnl|rn3|chr4 (83325280-83325150) | |
| 434-566, gnl|rn3|chr4 (83325143-83325232) | |
| 434-566, gnl|tetNig1|chr8 (6522151-6522281) | |
| 434-566, gnl|tetNig1|chr8 (6522289-6522199) | |
| 434-566, gnl|xenTro1|scaffold_190 (597847-597974) | |
| 434-566, gnl|xenTro1|scaffold_190 (597984-597892) | |
| 693-936, gnl|bosTau2|chr4 (36853642-36853398) | |
| 693-936, gnl|canFam2|chr14 (45815517-45815754) | |
| 693-936, gnl|danRer3|chr16 (11943984-11943785) | |
| 693-936, gnl|dasNov1|scaffold_1444 (13047-13284) | |
| 693-936, gnl|fr1|chrUn (103541761-103541527) | |
| 693-936, gnl|galGal2|chr2 (33095474-33095703) | |
| 693-936, gnl|hg17|chr7 (29891431-29891665) | |
| 693-936, gnl|Hg17|chr7 (29891438-29891679) | |
| 693-936, gnl|mm7|chr6 (54604139-54604373) | |
| 693-936, gnl|Mm7|chr6 (54604146-54604387) | |
| 693-936, gnl|monDom2|scaffold_7 (90334435-90334196) | |
| 693-936, gnl|oryCun1|scaffold_88006 (1938-2172) | |
| 693-936, gnl|panTro1|chr6 (31009200-31009434) | |
| 693-936, gnl|rheMac2|chr3 (96117888-96117654) | |
| 693-936, gnl|rn3|chr4 (83333741-83333975) | |
| 693-936, gnl|tetNig1|chr8 (6521870-6521653) | |
| 693-936, gnl|xenTro1|scaffold_190 (593862-593636) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 136-290, gnl|bosTau2|chr4 (36875166-36875012) | |
| 136-290, gnl|canFam2|chr14 (45795796-45795966) | |
| 136-290, gnl|dasNov1|scaffold_12143 (1530-1361) | |
| 136-290, gnl|echTel1|scaffold_173873 (6464-6311) | |
| 136-290, gnl|galGal2|chr2 (33089854-33090007) | |
| 136-290, gnl|hg17|chr7 (29867514-29867682) | |
| 136-290, gnl|Hg17|chr7 (29867570-29867721) | |
| 136-290, gnl|loxAfr1|scaffold_32870 (35377-35545) | |
| 136-290, gnl|mm7|chr6 (54587394-54587562) | |
| 136-290, gnl|Mm7|chr6 (54587450-54587601) | |
| 136-290, gnl|oryCun1|scaffold_207221 (188893-189070) | |
| 136-290, gnl|panTro1|chr6 (30982501-30982669) | |
| 136-290, gnl|rheMac2|chr3 (96141706-96141538) | |
| 136-290, gnl|rn3|chr4 (83319610-83319777) | |
| 434-566, gnl|bosTau2|chr4 (36870599-36870467) | |
| 434-566, gnl|canFam2|chr14 (45800615-45800485) | |
| 434-566, gnl|canFam2|chr14 (45800477-45800567) | |
| 434-566, gnl|danRer3|chr16 (11947099-11947229) | |
| 434-566, gnl|danRer3|chr16 (11947236-11947147) | |
| 434-566, gnl|dasNov1|scaffold_131118 (1550-1425) | |
| 434-566, gnl|dasNov1|scaffold_131118 (1426-1503) | |
| 434-566, gnl|echTel1|scaffold_173873 (8-90) | |
| 434-566, gnl|echTel1|scaffold_173873 (98-8) | |
| 434-566, gnl|fr1|chrUn (103542036-103542166) | |
| 434-566, gnl|fr1|chrUn (103542174-103542084) | |
| 434-566, gnl|galGal2|chr2 (33092499-33092369) | |
| 434-566, gnl|galGal2|chr2 (33092361-33092451) | |
| 434-566, gnl|hg17|chr12 (43853536-43853666) | |
| 434-566, gnl|hg17|chr7 (29874746-29874836) | |
| 434-566, gnl|Hg17|chr7 (29874751-29874883) | |
| 434-566, gnl|loxAfr1|scaffold_8324 (50004-49893) | |
| 434-566, gnl|loxAfr1|scaffold_8324 (49885-49975) | |
| 434-566, gnl|mm7|chr17 (30795696-30795566) | |
| 434-566, gnl|mm7|chr6 (54593183-54593273) | |
| 434-566, gnl|Mm7|chr6 (54593188-54593320) | |
| 434-566, gnl|monDom2|scaffold_7 (90342236-90342366) | |
| 434-566, gnl|oryCun1|scaffold_207221 (193437-193307) | |
| 434-566, gnl|oryCun1|scaffold_207221 (193299-193389) | |
| 434-566, gnl|panTro1|chr10 (44468748-44468878) | |
| 434-566, gnl|panTro1|chr6 (30989667-30989757) | |
| 434-566, gnl|rheMac2|chr3 (96134786-96134916) | |
| 434-566, gnl|rheMac2|chr3 (96134924-96134834) | |
| 434-566, gnl|rn3|chr4 (83325280-83325150) | |
| 434-566, gnl|rn3|chr4 (83325143-83325232) | |
| 434-566, gnl|tetNig1|chr8 (6522151-6522281) | |
| 434-566, gnl|tetNig1|chr8 (6522289-6522199) | |
| 434-566, gnl|xenTro1|scaffold_190 (597847-597974) | |
| 434-566, gnl|xenTro1|scaffold_190 (597984-597892) | |
| 693-936, gnl|bosTau2|chr4 (36853642-36853398) | |
| 693-936, gnl|canFam2|chr14 (45815517-45815754) | |
| 693-936, gnl|danRer3|chr16 (11943984-11943785) | |
| 693-936, gnl|dasNov1|scaffold_1444 (13047-13284) | |
| 693-936, gnl|fr1|chrUn (103541761-103541527) | |
| 693-936, gnl|galGal2|chr2 (33095474-33095703) | |
| 693-936, gnl|hg17|chr7 (29891431-29891665) | |
| 693-936, gnl|Hg17|chr7 (29891438-29891679) | |
| 693-936, gnl|mm7|chr6 (54604139-54604373) | |
| 693-936, gnl|Mm7|chr6 (54604146-54604387) | |
| 693-936, gnl|monDom2|scaffold_7 (90334435-90334196) | |
| 693-936, gnl|oryCun1|scaffold_88006 (1938-2172) | |
| 693-936, gnl|panTro1|chr6 (31009200-31009434) | |
| 693-936, gnl|rheMac2|chr3 (96117888-96117654) | |
| 693-936, gnl|rn3|chr4 (83333741-83333975) | |
| 693-936, gnl|tetNig1|chr8 (6521870-6521653) | |
| 693-936, gnl|xenTro1|scaffold_190 (593862-593636) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) | |
| fco (0.157208) |