Non-Coding RNA Search

Ss1.1-Pig1-60J20.5

Sequence:


               
               GATTTTAGCACAGGTGTGAGGACCATGGTGGGTTGGGTCACCCAGCACTGACTGGGTTTG
CTTTGCAAGTCCTTTGAGACACAGGCAATAGCCCAGTGGGAAAATGTACTTGTTTTTGGT
TGCTGCAGGGAGTCATTTTGGTGACGTGACAGCCAAAGGAAGTAGGTTCTGAAATGTTCC
TACCTGTAGAGCTTATTTGTAGCCTGGACACCTTTGTGTGTTTGGGTCCTTTCTCTGGCT
TTTTCTGAAGGCAGCAGCTTTGCTCAGTGAGCCTGCTGCCTCTTCAGCAGTAAGCATGGT
CTTCAACACTCTCTAGGAGCAAAACATAGTACTTGGGGTGCTGATTCTTCTTGGAAATTG
AATAACTTCACCATGTAGTCAACCATTCATTCTTTCAAGAAATATTTATGACTCTTGAGC
ACCTACTGTGTATCCAGCACTATTCCAGGCTCTAGTAATGTGACAGTGAACATGGCAGAT
AGGCCCTGTTCCCCTGGAGTTTATATTATGTTGCCAAAGATGGGCAAGAATACTCAGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTTAGCACAGGTGTGAGGACCATGGTGGGTTGGGTCACCCAGCACTGACTGGGTTTG
CTTTGCAAGTCCTTTGAGACACAGGCAATAGCCCAGTGGGAAAATGTACTTGTTTTTGGT
TGCTGCAGGGAGTCATTTTGGTGACGTGACAGCCAAAGGAAGTAGGTTCTGAAATGTTCC
TACCTGTAGAGCTTATTTGTAGCCTGGACACCTTTGTGTGTTTGGGTCCTTTCTCTGGCT
TTTTCTGAAGGCAGCAGCTTTGCTCAGTGAGCCTGCTGCCTCTTCAGCAGTAAGCATGGT
CTTCAACACTCTCTAGGAGCAAAACATAGTACTTGGGGTGCTGATTCTTCTTGGAAATTG
AATAACTTCACCATGTAGTCAACCATTCATTCTTTCAAGAAATATTTATGACTCTTGAGC
ACCTACTGTGTATCCAGCACTATTCCAGGCTCTAGTAATGTGACAGTGAACATGGCAGAT
AGGCCCTGTTCCCCTGGAGTTTATATTATGTTGCCAAAGATGGGCAAGAATACTCAGGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-318, + strand, RNAz p=0.847658

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-318, + strand, RNAz p=0.847658

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-538, gnl|bosTau2|chr10 (56626485-56627020)
               

               
               2-538, gnl|Hg17|chr14 (74544461-74544988)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-538, gnl|bosTau2|chr10 (56626485-56627020)
               

               
               2-538, gnl|Hg17|chr14 (74544461-74544988)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	2-538, gnl\|bosTau2\|chr10 (56626485-56627020)
	2-538, gnl\|Hg17\|chr14 (74544461-74544988)