Non-Coding RNA Search

Ss1.1-Pig1-60K12.5

Sequence:


               
               CGGCAACACCAAGAACCACCCGATGCTCATGACCCTTCTTAAAGATAATCCTGCCCAGGA
TTTCTCAACCCTTTATGGAAGCAGCCCTTTAGAAAGGCAGAACTCCTCTTCCGGCTCACC
CCGGATGGAAATGTGCTCGGGAAGCACCAAGCCAAAGAAGAAGAAGTCATCAAGATTCCC
ACCTGACAAACCTAAGCACCACCCCCCCGATGACTTTCAGAGGGAGCTATTTTCAATGGA
TGTTGACTCACAGAACCCTATCTTTGATGTCCACATGACAGCTGACACGCTGGATACGCC
ACACATCACTCCAGCTCCAAGCCAGTGTAGCACTCCCCCAACAACTTACCCACAACCAGT
ACCTCACCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCAACACCAAGAACCACCCGATGCTCATGACCCTTCTTAAAGATAATCCTGCCCAGGA
TTTCTCAACCCTTTATGGAAGCAGCCCTTTAGAAAGGCAGAACTCCTCTTCCGGCTCACC
CCGGATGGAAATGTGCTCGGGAAGCACCAAGCCAAAGAAGAAGAAGTCATCAAGATTCCC
ACCTGACAAACCTAAGCACCACCCCCCCGATGACTTTCAGAGGGAGCTATTTTCAATGGA
TGTTGACTCACAGAACCCTATCTTTGATGTCCACATGACAGCTGACACGCTGGATACGCC
ACACATCACTCCAGCTCCAAGCCAGTGTAGCACTCCCCCAACAACTTACCCACAACCAGT
ACCTCACCCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|703108|gb|AAC41736.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|703108|gb|AAC41736.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-120, - strand, RNAz p=0.912174
               

               
               161-360, - strand, RNAz p=0.742146

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.912174
               

               
               161-360, - strand, RNAz p=0.742146

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-372, gnl|bosTau2|chr19 (32930468-32930097)
               

               
               1-372, gnl|canFam2|chr9 (26341421-26340526)
               

               
               1-372, gnl|dasNov1|scaffold_9650 (35944-36842)
               

               
               1-372, gnl|echTel1|scaffold_306575 (66988-66093)
               

               
               1-372, gnl|fr1|chrUn (43147706-43148844)
               

               
               1-372, gnl|galGal2|chr27 (2641249-2642137)
               

               
               1-372, gnl|hg17|chr17 (34819632-34820525)
               

               
               1-372, gnl|Hg17|chr17 (34820092-34819721)
               

               
               1-372, gnl|loxAfr1|scaffold_52439 (3398-4293)
               

               
               1-372, gnl|mm7|chr11 (98266640-98267535)
               

               
               1-372, gnl|Mm7|chr11 (98267100-98266729)
               

               
               1-372, gnl|monDom2|scaffold_18 (48383125-48384016)
               

               
               1-372, gnl|oryCun1|scaffold_203399 (43986-44881)
               

               
               1-372, gnl|panTro1|chr19 (38054753-38055646)
               

               
               1-372, gnl|rheMac2|chr16 (49490403-49491296)
               

               
               1-372, gnl|rn3|chr10 (86935268-86936161)
               

               
               1-372, gnl|tetNig1|chr2_random (175479-176628)
               

               
               1-372, gnl|xenTro1|scaffold_334 (131378-130493)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-372, gnl|bosTau2|chr19 (32930468-32930097)
               

               
               1-372, gnl|canFam2|chr9 (26341421-26340526)
               

               
               1-372, gnl|dasNov1|scaffold_9650 (35944-36842)
               

               
               1-372, gnl|echTel1|scaffold_306575 (66988-66093)
               

               
               1-372, gnl|fr1|chrUn (43147706-43148844)
               

               
               1-372, gnl|galGal2|chr27 (2641249-2642137)
               

               
               1-372, gnl|hg17|chr17 (34819632-34820525)
               

               
               1-372, gnl|Hg17|chr17 (34820092-34819721)
               

               
               1-372, gnl|loxAfr1|scaffold_52439 (3398-4293)
               

               
               1-372, gnl|mm7|chr11 (98266640-98267535)
               

               
               1-372, gnl|Mm7|chr11 (98267100-98266729)
               

               
               1-372, gnl|monDom2|scaffold_18 (48383125-48384016)
               

               
               1-372, gnl|oryCun1|scaffold_203399 (43986-44881)
               

               
               1-372, gnl|panTro1|chr19 (38054753-38055646)
               

               
               1-372, gnl|rheMac2|chr16 (49490403-49491296)
               

               
               1-372, gnl|rn3|chr10 (86935268-86936161)
               

               
               1-372, gnl|tetNig1|chr2_random (175479-176628)
               

               
               1-372, gnl|xenTro1|scaffold_334 (131378-130493)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	1-120, - strand, RNAz p=0.912174
	161-360, - strand, RNAz p=0.742146

	1-372, gnl\|bosTau2\|chr19 (32930468-32930097)
	1-372, gnl\|canFam2\|chr9 (26341421-26340526)
	1-372, gnl\|dasNov1\|scaffold_9650 (35944-36842)
	1-372, gnl\|echTel1\|scaffold_306575 (66988-66093)
	1-372, gnl\|fr1\|chrUn (43147706-43148844)
	1-372, gnl\|galGal2\|chr27 (2641249-2642137)
	1-372, gnl\|hg17\|chr17 (34819632-34820525)
	1-372, gnl\|Hg17\|chr17 (34820092-34819721)
	1-372, gnl\|loxAfr1\|scaffold_52439 (3398-4293)
	1-372, gnl\|mm7\|chr11 (98266640-98267535)
	1-372, gnl\|Mm7\|chr11 (98267100-98266729)
	1-372, gnl\|monDom2\|scaffold_18 (48383125-48384016)
	1-372, gnl\|oryCun1\|scaffold_203399 (43986-44881)
	1-372, gnl\|panTro1\|chr19 (38054753-38055646)
	1-372, gnl\|rheMac2\|chr16 (49490403-49491296)
	1-372, gnl\|rn3\|chr10 (86935268-86936161)
	1-372, gnl\|tetNig1\|chr2_random (175479-176628)
	1-372, gnl\|xenTro1\|scaffold_334 (131378-130493)