Non-Coding RNA Search

Ss1.1-Pig1-60M04.5

Sequence:


               
               CCAGAATGGGGAGGGGGCCTCCCCGCTCCTCACAGCTGCTAAAGGAGGGGGCACTGAGCA
AGAGGTCTTCCAACAGCCCCGGCCCGGGGAGGGGGGGCAGCTCTGCCAGGGCCCCAGTGT
TCGCGGCTCCTCCTCCCTCATGGCCTCCAGGACGCCCCTCCGTCCTCTGCAGCACCTTCG
TTTACAGGTCGTCTTTTCTATTTTCCGCCTGCATGTCCTTTGCATTTCAGATTCTTTAGA
TTGGATGCATGGTCACGCTGGGACCGAGAAGAGCCACTCGACAGTGTATTTGATTCCCCT
TTTAGCAATAAAGTTAACACCTTTTCCTTCTCCCAGCCCGACCCCCCGGCCCCCAAACCC
ACCTAGGACTTCCACTTCCTCTCCAGCCCTGTCCTCTGCGCCCCCCCACCCCGAAAAAAA
CTGGGTCCACTGCTAATTTGTCAAAAAGGTAATTGTTTAAAAAAAAAAAAATCCTCAACC
AACAAATGAGAACCCTGCCCCTCGAAATGTCCAAACACCTGACTGTTGACACTTGAACAT
TTTTATATTATAAATAAAAGCAGAAATAACTCCCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAATGGGGAGGGGGCCTCCCCGCTCCTCACAGCTGCTAAAGGAGGGGGCACTGAGCA
AGAGGTCTTCCAACAGCCCCGGCCCGGGGAGGGGGGGCAGCTCTGCCAGGGCCCCAGTGT
TCGCGGCTCCTCCTCCCTCATGGCCTCCAGGACGCCCCTCCGTCCTCTGCAGCACCTTCG
TTTACAGGTCGTCTTTTCTATTTTCCGCCTGCATGTCCTTTGCATTTCAGATTCTTTAGA
TTGGATGCATGGTCACGCTGGGACCGAGAAGAGCCACTCGACAGTGTATTTGATTCCCCT
TTTAGCAATAAAGTTAACACCTTTTCCTTCTCCCAGCCCGACCCCCCGGCCCCCAAACCC
ACCTAGGACTTCCACTTCCTCTCCAGCCCTGTCCTCTGCGCCCCCCCACCCCGAAAAAAA
CTGGGTCCACTGCTAATTTGTCAAAAAGGTAATTGTTTAAAAAAAAAAAAATCCTCAACC
AACAAATGAGAACCCTGCCCCTCGAAATGTCCAAACACCTGACTGTTGACACTTGAACAT
TTTTATATTATAAATAAAAGCAGAAATAACTCCCGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-117, + strand, RNAz p=0.566077

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.566077

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-389, gnl|bosTau2|chr7 (29821646-29822029)
               

               
               1-389, gnl|Hg17|chr5 (139207096-139206761)
               

               
               1-389, gnl|Mm7|chr18 (36393412-36393070)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-389, gnl|bosTau2|chr7 (29821646-29822029)
               

               
               1-389, gnl|Hg17|chr5 (139207096-139206761)
               

               
               1-389, gnl|Mm7|chr18 (36393412-36393070)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fce (0.271592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	1-389, gnl\|bosTau2\|chr7 (29821646-29822029)
	1-389, gnl\|Hg17\|chr5 (139207096-139206761)
	1-389, gnl\|Mm7\|chr18 (36393412-36393070)