Non-Coding RNA Search

Ss1.1-Pig1-60O03.5

Sequence:


               
               CTTTAGGAAACGATAGATTCTTGGATATTATTCTTATAAGTTCCGATGGTGACAGATTTG
TCTTGAGGTCACATTTTCCCCTTGACAAGTGGCATCATGTCACTTCTGCTTTCACACTAC
TGCCATACTTCTGTACGTTTTTTGTTTGGCTGTTGTTGTTTGGGGGTAGAGCAGTTATAG
GAAACTCTGAAACCCTTAGGTAGTTTCCCTGAAAAAAAAAAATCTGTCTATTGATTTTTA
GATCTTTCCTTTCCAAAAGCTGGATACACGTGAAGATGTTTGGGAATTTTCTTTGCTGCT
ACCGCGCTGCCACCAAATGGAATTGACCAGCGGCTGTTACACTGTTCTTTGCCACCGTGC
CTATGCTCAGAATCTGCTCACTGCTAAGCTGCAGACAAGGACAGGGTCAGAAACATAGGT
GTCCCACCCCATTGCAGACTGCAGACTGCCTTCCCTCCCTGGCATCAGCCTCGGGAGTTC
AGGAGGACACAAAGACAAAAGGGCCAGCACAGCTCACCGGCGTGGGGCTCATCTTAAACT
GCAGTCAGCCACGTCAGCTCTTGTGATAAGCTGACCGTTCTCTCTGGAGAACCTGGGGTC
CCCGCCAGTCACCACACTGGCGTGGGCCCAAATCCATCTCTTGGGCTCTTTTGAAGCACA
GCCTGTTTTTGAGCCGAGGGTTAGGGAGATGGCGTCTGGAGGTGGGACCCACCACCCAGA
GCCAGGGAGAGGAGGAGCCCCCCTCCCTGAGCCGGGGCTCCCTGTGCAGCCTTTTCCAGT
GAGATGTTTTAAGCAGTGCCATGTTCCTCGTTTGATCAGAAGACAGTCTATAAAGTATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTAGGAAACGATAGATTCTTGGATATTATTCTTATAAGTTCCGATGGTGACAGATTTG
TCTTGAGGTCACATTTTCCCCTTGACAAGTGGCATCATGTCACTTCTGCTTTCACACTAC
TGCCATACTTCTGTACGTTTTTTGTTTGGCTGTTGTTGTTTGGGGGTAGAGCAGTTATAG
GAAACTCTGAAACCCTTAGGTAGTTTCCCTGAAAAAAAAAAATCTGTCTATTGATTTTTA
GATCTTTCCTTTCCAAAAGCTGGATACACGTGAAGATGTTTGGGAATTTTCTTTGCTGCT
ACCGCGCTGCCACCAAATGGAATTGACCAGCGGCTGTTACACTGTTCTTTGCCACCGTGC
CTATGCTCAGAATCTGCTCACTGCTAAGCTGCAGACAAGGACAGGGTCAGAAACATAGGT
GTCCCACCCCATTGCAGACTGCAGACTGCCTTCCCTCCCTGGCATCAGCCTCGGGAGTTC
AGGAGGACACAAAGACAAAAGGGCCAGCACAGCTCACCGGCGTGGGGCTCATCTTAAACT
GCAGTCAGCCACGTCAGCTCTTGTGATAAGCTGACCGTTCTCTCTGGAGAACCTGGGGTC
CCCGCCAGTCACCACACTGGCGTGGGCCCAAATCCATCTCTTGGGCTCTTTTGAAGCACA
GCCTGTTTTTGAGCCGAGGGTTAGGGAGATGGCGTCTGGAGGTGGGACCCACCACCCAGA
GCCAGGGAGAGGAGGAGCCCCCCTCCCTGAGCCGGGGCTCCCTGTGCAGCCTTTTCCAGT
GAGATGTTTTAAGCAGTGCCATGTTCCTCGTTTGATCAGAAGACAGTCTATAAAGTATTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               526-794, - strand, RNAz p=0.991021

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               526-794, - strand, RNAz p=0.991021

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               708-829, + strand, RNAmicro p=0.949874

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               708-829, + strand, RNAmicro p=0.949874

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chr22 (9003534-9002696)
               

               
               1-840, gnl|Hg17|chr3 (37998087-37998898)
               

               
               1-840, gnl|Mm7|chr9 (118721597-118722385)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr22 (9003534-9002696)
               

               
               1-840, gnl|Hg17|chr3 (37998087-37998898)
               

               
               1-840, gnl|Mm7|chr9 (118721597-118722385)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fli (0.202881)
               

               
               cki (0.165235)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               cki (0.165235)

	1-840, gnl\|bosTau2\|chr22 (9003534-9002696)
	1-840, gnl\|Hg17\|chr3 (37998087-37998898)
	1-840, gnl\|Mm7\|chr9 (118721597-118722385)