Non-Coding RNA Search

Ss1.1-Pig1-61A12.5

Sequence:


               
               GAGCATTCCTACTCTTTTTTTTTATTATTATTATTATTTTAAATCCTCCAATGTACAGAA
CTAAAAAAAAAAAAAGCTTCCTTTTCAGCTTATTAGTTCCCAGGCCAAGGATCAAATCCA
TGCCACAGCAGCCACCCAAGCCACTACGTTGACCATGCCGGATCCTTAACCTGCTGTCCC
AGAAGGGAAGTCCAACGGTTTCTTTTTAGATGATAGTGAAATGGTAAGTGTTTAGAATAT
CCTGGACAGAAGCCCTCTGTTAATCTAGAACACGAGAAGAGAATTCAGAAGCATCTCTCA
GAAGCTTTCTGAGAGAACAGAACTGGGGTTCTCAATATCTGCAGTGGGGACCTCCTGCCC
TAATTTATGCTGTGAGTGAAAGAAGGGTGTTTTCTTCAGCGATTTCCTATCACAAAATAT
GGAAGAGAAAATAGCTTTATCACTCAGTTGAGTAACATCTAGATGCCACCACTGACTGAC
TGCCCTGTCTTCACTAGTGTCATTTAAATCACCTCCTCTTCCAGTGTATTGTTTTCTTGG
CCTTCTCTTTTAAAGGAGCATATTTAAGAATTAAGTGTGAGTTTAGGAAGCTCTCTAGGC
TTTCTCAGATTGTCGGCGGTAGTTGAATCCCATGTTACCTTGTAGAACAGGGTCCCTCTC
AGTGCTGTGGTCTTGTAGTATCGTATTGCAGGCAATCTTCAGAACGGGACAGCAGCCCAA
ACACTGTCAAACTGGAATTGGCCACGGTGGAAAGCAGTTACCCAGTTTGTCTTTAATTCA
GAGACACTTGCTCTAGTGAGGCCGGGCGGTTTTGTCGGATCCCGTGGGGCAAAGCATGCC
CCTTCTGTGCCCCTTCCGTCACCGGCCTCCGGGGGCAGAGGTTTCCCTTTGTGTCTTCAT
GACTTTTTGTTGCCTGTTGTAACCAAATAGCTGTTGGATCTTAAAATACAGAGGAAAGAG
ACTGAAATTGTAAATACTTTGTAAACAGAATCATTTGTACTTAAACAGTAGGGTTTTAAA
GAGCACGGCTATCCCACCAAACAAAAGGTATAATAAATTGACCTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCATTCCTACTCTTTTTTTTTATTATTATTATTATTTTAAATCCTCCAATGTACAGAA
CTAAAAAAAAAAAAAGCTTCCTTTTCAGCTTATTAGTTCCCAGGCCAAGGATCAAATCCA
TGCCACAGCAGCCACCCAAGCCACTACGTTGACCATGCCGGATCCTTAACCTGCTGTCCC
AGAAGGGAAGTCCAACGGTTTCTTTTTAGATGATAGTGAAATGGTAAGTGTTTAGAATAT
CCTGGACAGAAGCCCTCTGTTAATCTAGAACACGAGAAGAGAATTCAGAAGCATCTCTCA
GAAGCTTTCTGAGAGAACAGAACTGGGGTTCTCAATATCTGCAGTGGGGACCTCCTGCCC
TAATTTATGCTGTGAGTGAAAGAAGGGTGTTTTCTTCAGCGATTTCCTATCACAAAATAT
GGAAGAGAAAATAGCTTTATCACTCAGTTGAGTAACATCTAGATGCCACCACTGACTGAC
TGCCCTGTCTTCACTAGTGTCATTTAAATCACCTCCTCTTCCAGTGTATTGTTTTCTTGG
CCTTCTCTTTTAAAGGAGCATATTTAAGAATTAAGTGTGAGTTTAGGAAGCTCTCTAGGC
TTTCTCAGATTGTCGGCGGTAGTTGAATCCCATGTTACCTTGTAGAACAGGGTCCCTCTC
AGTGCTGTGGTCTTGTAGTATCGTATTGCAGGCAATCTTCAGAACGGGACAGCAGCCCAA
ACACTGTCAAACTGGAATTGGCCACGGTGGAAAGCAGTTACCCAGTTTGTCTTTAATTCA
GAGACACTTGCTCTAGTGAGGCCGGGCGGTTTTGTCGGATCCCGTGGGGCAAAGCATGCC
CCTTCTGTGCCCCTTCCGTCACCGGCCTCCGGGGGCAGAGGTTTCCCTTTGTGTCTTCAT
GACTTTTTGTTGCCTGTTGTAACCAAATAGCTGTTGGATCTTAAAATACAGAGGAAAGAG
ACTGAAATTGTAAATACTTTGTAAACAGAATCATTTGTACTTAAACAGTAGGGTTTTAAA
GAGCACGGCTATCCCACCAAACAAAAGGTATAATAAATTGACCTTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               230-331, - strand, RNAz p=0.860938

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-331, - strand, RNAz p=0.860938

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               195-1068, gnl|bosTau2|chr17 (23627082-23626202)
               

               
               195-1068, gnl|Hg17|chr12 (131230330-131231230)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               195-1068, gnl|bosTau2|chr17 (23627082-23626202)
               

               
               195-1068, gnl|Hg17|chr12 (131230330-131231230)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mas (0.210305)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               cty (0.10408)

	195-1068, gnl\|bosTau2\|chr17 (23627082-23626202)
	195-1068, gnl\|Hg17\|chr12 (131230330-131231230)