Ss1.1-Pig1-61D19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCACCTGGACCCCCACCCCCACACCCGCCGCCACGTCGGCCTTCTTTGTTGGGCAAATCA AGTTAAAATCAGATGATCCCAGACAAGAGGTTTTTCCAAAGTTTATAAATCCAACATCCT TGTTGCATAAGAAACACAGACACCCGGAGACGTTACTCAAAAGTAGAAAACCCCAACTGT GCGCGCTTAGAANACACTGAGGCTTCCTGGGGTGTCTTCATTTCCTGAGCCGCGTCCTCA GCGGTCAGGATGCCAGCGGCTGTTCTCCTTTTTCTCCCCACCTCCCCCAGCCCCGTCCGT GCTCCTTGGCTGTGTTTGCCACTGAGAGGCTGAAGCCTTCGGCTTTGGTCGGGAAGGTGT GAACCTTGGACCAGACCTGCCATTTTGGGTCTTGGTGCAGTTTCCTTTGAGACTGAATCC AGGAGGGCCCTCGTACTCACGGGTGACAAAGCATTTAGCCCCTGTGATGCCTGGTACTAA AGGAACCTAGGAGATAAATGACTACAGAACAACACACCGTGAACCTGAAGGCGATCCTCC TGGTTCACTGGCTGCTGACCATCTGGGGCTGCATTGTGTTCCCGGGCCCCTATGCCTGGG CCAACTTCACCATCCTGGCCTTGGGCGTGTGGGCCGTGGCGCAGCGGGACTCCGTCGACG CCATAAGTATGTTTCTGGGTGGCCTGGCGGTCACCATCTTCCTGGACATCGGCCACATCA TCATCTTCTACCCGAGGGCCGGCCTCTCGGACACGGGGCGCTTCACCGCGGGCATGGCCA TCCTCAGCCTGCTCCTGAAGCCGTTCTCCTGCTGCCTCGTCTACCACATGTACCGGGAGC GCGGGGGTTTCCTTGTGCCTTCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCACCTGGACCCCCACCCCCACACCCGCCGCCACGTCGGCCTTCTTTGTTGGGCAAATCA AGTTAAAATCAGATGATCCCAGACAAGAGGTTTTTCCAAAGTTTATAAATCCAACATCCT TGTTGCATAAGAAACACAGACACCCGGAGACGTTACTCAAAAGTAGAAAACCCCAACTGT GCGCGCTTAGAANACACTGAGGCTTCCTGGGGTGTCTTCATTTCCTGAGCCGCGTCCTCA GCGGTCAGGATGCCAGCGGCTGTTCTCCTTTTTCTCCCCACCTCCCCCAGCCCCGTCCGT GCTCCTTGGCTGTGTTTGCCACTGAGAGGCTGAAGCCTTCGGCTTTGGTCGGGAAGGTGT GAACCTTGGACCAGACCTGCCATTTTGGGTCTTGGTGCAGTTTCCTTTGAGACTGAATCC AGGAGGGCCCTCGTACTCACGGGTGACAAAGCATTTAGCCCCTGTGATGCCTGGTACTAA AGGAACCTAGGAGATAAATGACTACAGAACAACACACCGTGAACCTGAAGGCGATCCTCC TGGTTCACTGGCTGCTGACCATCTGGGGCTGCATTGTGTTCCCGGGCCCCTATGCCTGGG CCAACTTCACCATCCTGGCCTTGGGCGTGTGGGCCGTGGCGCAGCGGGACTCCGTCGACG CCATAAGTATGTTTCTGGGTGGCCTGGCGGTCACCATCTTCCTGGACATCGGCCACATCA TCATCTTCTACCCGAGGGCCGGCCTCTCGGACACGGGGCGCTTCACCGCGGGCATGGCCA TCCTCAGCCTGCTCCTGAAGCCGTTCTCCTGCTGCCTCGTCTACCACATGTACCGGGAGC GCGGGGGTTTCCTTGTGCCTTCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 236-350, + strand, RNAz p=0.845275 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 236-350, + strand, RNAz p=0.845275 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 39-350, gnl|bosTau2|chr16 (21587332-21587033) | |
| 39-350, gnl|Hg17|chr1 (11730984-11731301) | |
| 354-516, gnl|bosTau2|chr16 (21586817-21586655) | |
| 354-516, gnl|canFam2|chr2 (87385343-87385190) | |
| 354-516, gnl|dasNov1|scaffold_48956 (5422-5574) | |
| 354-516, gnl|echTel1|scaffold_285151 (1295-1455) | |
| 354-516, gnl|hg17|chr1 (11731306-11731490) | |
| 354-516, gnl|Hg17|chr1 (11731305-11731470) | |
| 354-516, gnl|loxAfr1|scaffold_49081 (475-661) | |
| 354-516, gnl|mm7|chr4 (147076940-147076785) | |
| 354-516, gnl|oryCun1|scaffold_28078 (78-229) | |
| 354-516, gnl|panTro1|chr1 (11947424-11947608) | |
| 354-516, gnl|rheMac2|chr1 (14833936-14834117) | |
| 354-516, gnl|rn3|chr5 (165174175-165174012) | |
| 671-848, gnl|bosTau2|chr16 (21571166-21570989) | |
| 671-848, gnl|canFam2|chr2 (87376147-87376002) | |
| 671-848, gnl|danRer3|chrNA (218044216-218044371) | |
| 671-848, gnl|fr1|chrUn (287802367-287802224) | |
| 671-848, gnl|hg17|chr1 (11742727-11742871) | |
| 671-848, gnl|Hg17|chr1 (11742737-11742914) | |
| 671-848, gnl|mm7|chr4 (147071313-147071169) | |
| 671-848, gnl|Mm7|chr4 (147071301-147071124) | |
| 671-848, gnl|monDom2|scaffold_175 (362133-361986) | |
| 671-848, gnl|oryCun1|scaffold_145651 (2179-2323) | |
| 671-848, gnl|panTro1|chr1 (11958855-11958999) | |
| 671-848, gnl|rheMac2|chr1 (14846303-14846447) | |
| 671-848, gnl|rn3|chr5 (165167511-165167367) | |
| 671-848, gnl|tetNig1|chrUn_random (17881820-17881966) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-350, gnl|bosTau2|chr16 (21587332-21587033) | |
| 39-350, gnl|Hg17|chr1 (11730984-11731301) | |
| 354-516, gnl|bosTau2|chr16 (21586817-21586655) | |
| 354-516, gnl|canFam2|chr2 (87385343-87385190) | |
| 354-516, gnl|dasNov1|scaffold_48956 (5422-5574) | |
| 354-516, gnl|echTel1|scaffold_285151 (1295-1455) | |
| 354-516, gnl|hg17|chr1 (11731306-11731490) | |
| 354-516, gnl|Hg17|chr1 (11731305-11731470) | |
| 354-516, gnl|loxAfr1|scaffold_49081 (475-661) | |
| 354-516, gnl|mm7|chr4 (147076940-147076785) | |
| 354-516, gnl|oryCun1|scaffold_28078 (78-229) | |
| 354-516, gnl|panTro1|chr1 (11947424-11947608) | |
| 354-516, gnl|rheMac2|chr1 (14833936-14834117) | |
| 354-516, gnl|rn3|chr5 (165174175-165174012) | |
| 671-848, gnl|bosTau2|chr16 (21571166-21570989) | |
| 671-848, gnl|canFam2|chr2 (87376147-87376002) | |
| 671-848, gnl|danRer3|chrNA (218044216-218044371) | |
| 671-848, gnl|fr1|chrUn (287802367-287802224) | |
| 671-848, gnl|hg17|chr1 (11742727-11742871) | |
| 671-848, gnl|Hg17|chr1 (11742737-11742914) | |
| 671-848, gnl|mm7|chr4 (147071313-147071169) | |
| 671-848, gnl|Mm7|chr4 (147071301-147071124) | |
| 671-848, gnl|monDom2|scaffold_175 (362133-361986) | |
| 671-848, gnl|oryCun1|scaffold_145651 (2179-2323) | |
| 671-848, gnl|panTro1|chr1 (11958855-11958999) | |
| 671-848, gnl|rheMac2|chr1 (14846303-14846447) | |
| 671-848, gnl|rn3|chr5 (165167511-165167367) | |
| 671-848, gnl|tetNig1|chrUn_random (17881820-17881966) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |