Non-Coding RNA Search

Ss1.1-Pig1-61G12.5

Sequence:


               
               CGCTGGACTCTGCCCGCGGACAGGCAGGCCGGGGGGTAGTCTCTGCGCCCGGCACTCAGG
AAACCCGAGAGCCCCCCTTGCCTGGCGTGAGGGTTCCTGTCTGGTCCCGCAGCCCGGTCG
GGACCCGAGCCTTTCCCTAAGCCCGCCAGGGGGCGCCGCCTTGAGGGGCTGCAGAGCGGG
GGTCGGGCGCGGCTGAGGGGAGAAGGGGCGCCAGGCCGGGCCAGGGGAGAGGGCTCTCCC
CCGCTCAGGAGGTGCCCCTGGGCGGGGACCGGGAGTCCTCACCTCCGGACTGAGGCAAGG
GTTTCTGGGGGGCTCGGAGGGCGCGTCGCCCTCTGCCCCCGCCGGCACCCTGGCCATGAC
GGGCAAATCGGTGAAGGACGTGGATCGGTATCAGGCGGTTCTGGCCAACCTGCTGCTGGA
GGAGGATAACAAGTTTTGTGCGGACTGCCAGTCTAAAGGGCCGCGATGGGCCTCCTGGAA
CATTGGCGTGTTCATCTGCATCCGCTGTGCTGGAATCCACAGGAACCTCGGGGTGCACAT
ATCCAGGGTCAAGTCAGTTAACCTCGACCAGTGGACCCAAGAACAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTGGACTCTGCCCGCGGACAGGCAGGCCGGGGGGTAGTCTCTGCGCCCGGCACTCAGG
AAACCCGAGAGCCCCCCTTGCCTGGCGTGAGGGTTCCTGTCTGGTCCCGCAGCCCGGTCG
GGACCCGAGCCTTTCCCTAAGCCCGCCAGGGGGCGCCGCCTTGAGGGGCTGCAGAGCGGG
GGTCGGGCGCGGCTGAGGGGAGAAGGGGCGCCAGGCCGGGCCAGGGGAGAGGGCTCTCCC
CCGCTCAGGAGGTGCCCCTGGGCGGGGACCGGGAGTCCTCACCTCCGGACTGAGGCAAGG
GTTTCTGGGGGGCTCGGAGGGCGCGTCGCCCTCTGCCCCCGCCGGCACCCTGGCCATGAC
GGGCAAATCGGTGAAGGACGTGGATCGGTATCAGGCGGTTCTGGCCAACCTGCTGCTGGA
GGAGGATAACAAGTTTTGTGCGGACTGCCAGTCTAAAGGGCCGCGATGGGCCTCCTGGAA
CATTGGCGTGTTCATCTGCATCCGCTGTGCTGGAATCCACAGGAACCTCGGGGTGCACAT
ATCCAGGGTCAAGTCAGTTAACCTCGACCAGTGGACCCAAGAACAGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61880771|ref|XP_592324.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61880771|ref|XP_592324.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               244-362, - strand, RNAz p=0.920963
               

               
               272-366, - strand, RNAz p=0.948274

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               244-362, - strand, RNAz p=0.920963
               

               
               272-366, - strand, RNAz p=0.948274

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               12-459, gnl|bosTau2|chr3 (67947530-67947980)
               

               
               12-459, gnl|canFam2|chr15 (5619291-5618895)
               

               
               12-459, gnl|dasNov1|scaffold_11543 (41740-42082)
               

               
               12-459, gnl|echTel1|scaffold_304057 (664-325)
               

               
               12-459, gnl|hg17|chr1 (40508545-40508886)
               

               
               12-459, gnl|Hg17|chr1 (40508549-40508989)
               

               
               12-459, gnl|mm7|chr4 (120457152-120456831)
               

               
               12-459, gnl|Mm7|chr4 (120457148-120456726)
               

               
               12-459, gnl|monDom2|scaffold_43 (8677960-8677598)
               

               
               12-459, gnl|oryCun1|scaffold_202969 (61944-61600)
               

               
               12-459, gnl|panTro1|chr1 (41400032-41400375)
               

               
               12-459, gnl|rheMac2|chr1 (43255108-43255451)
               

               
               12-459, gnl|rn3|chr5 (141596121-141595811)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-459, gnl|bosTau2|chr3 (67947530-67947980)
               

               
               12-459, gnl|canFam2|chr15 (5619291-5618895)
               

               
               12-459, gnl|dasNov1|scaffold_11543 (41740-42082)
               

               
               12-459, gnl|echTel1|scaffold_304057 (664-325)
               

               
               12-459, gnl|hg17|chr1 (40508545-40508886)
               

               
               12-459, gnl|Hg17|chr1 (40508549-40508989)
               

               
               12-459, gnl|mm7|chr4 (120457152-120456831)
               

               
               12-459, gnl|Mm7|chr4 (120457148-120456726)
               

               
               12-459, gnl|monDom2|scaffold_43 (8677960-8677598)
               

               
               12-459, gnl|oryCun1|scaffold_202969 (61944-61600)
               

               
               12-459, gnl|panTro1|chr1 (41400032-41400375)
               

               
               12-459, gnl|rheMac2|chr1 (43255108-43255451)
               

               
               12-459, gnl|rn3|chr5 (141596121-141595811)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               ebs (0.118301)

	244-362, - strand, RNAz p=0.920963
	272-366, - strand, RNAz p=0.948274

	12-459, gnl\|bosTau2\|chr3 (67947530-67947980)
	12-459, gnl\|canFam2\|chr15 (5619291-5618895)
	12-459, gnl\|dasNov1\|scaffold_11543 (41740-42082)
	12-459, gnl\|echTel1\|scaffold_304057 (664-325)
	12-459, gnl\|hg17\|chr1 (40508545-40508886)
	12-459, gnl\|Hg17\|chr1 (40508549-40508989)
	12-459, gnl\|mm7\|chr4 (120457152-120456831)
	12-459, gnl\|Mm7\|chr4 (120457148-120456726)
	12-459, gnl\|monDom2\|scaffold_43 (8677960-8677598)
	12-459, gnl\|oryCun1\|scaffold_202969 (61944-61600)
	12-459, gnl\|panTro1\|chr1 (41400032-41400375)
	12-459, gnl\|rheMac2\|chr1 (43255108-43255451)
	12-459, gnl\|rn3\|chr5 (141596121-141595811)