Non-Coding RNA Search

Ss1.1-Pig1-62C24.5

Sequence:


               
               CGCAGTGACGTCAGGCAGTTCAGGAGGGTGCCGTCGGCCAGCTCCCACTTCCAGGCCCAA
GACAGTCCCGCGCAGTGAGCCGTATCGCAGAAACCGCAGGCCACCCGCGTTGGTCGCCAC
GTTGCCCCCAATGTGGCAGCTGCCCTTAGCCCCCAGGTCCAGCGGCATGACGAAGCCCCG
CTCCTCCACGTACCGGCTCAGCTCCTCCAGGACGCACCCCGCCTGGCAAACCAGAACCCC
TGACACGTCGTGGAAGCTGAGGACCTGGCTCATGAGGGCTGTGGACAGGACGATCTCGTC
AAAGACGGGGGTGCTGCCCCCCACCAGGCCTGTGTTGCCGCCCTGTGGGTTCACCGCCAG
GTTCCTCTCGTGACAGTACCTGAGGATTTGAGCCACCTCCTGGGATGTCCGGGGCCGGAG
GAGCACCTTGCTGGAGCCTCGGACCGTCCTCAGCCAGTCTACGTTCGGAGCCTCCAGCTC
CTCTGGGTCTGTGATGACCCTGCCAGGGATGATGCGCTCCAGGGCGGCCAGGTCGTCCTC
AGACACCACGGAGAACGGCAGCCGCTGCATGGGGTAGCGGTCCCGAGTTAGCCTCACCCC
AGGAGCACTGGAGGAAGCAGAGGAACTGCCTCTTCGGACCAGGGGGCTGGTGCCCAGGGC
CCCCGCGGGGCCGCCCAGCCCAGAGATCCTGGTGGCCCCTGCCCACATCCTCTGCTGCAC
GAAGGCTCTCCGAGTGCAGGCTGCCCGCCACCAGAAGAGCCACGCAGGCCACCTGGGCAC
CAGAAGGGGCATGATGGTGCTTGTCCTGAAGGCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGTGACGTCAGGCAGTTCAGGAGGGTGCCGTCGGCCAGCTCCCACTTCCAGGCCCAA
GACAGTCCCGCGCAGTGAGCCGTATCGCAGAAACCGCAGGCCACCCGCGTTGGTCGCCAC
GTTGCCCCCAATGTGGCAGCTGCCCTTAGCCCCCAGGTCCAGCGGCATGACGAAGCCCCG
CTCCTCCACGTACCGGCTCAGCTCCTCCAGGACGCACCCCGCCTGGCAAACCAGAACCCC
TGACACGTCGTGGAAGCTGAGGACCTGGCTCATGAGGGCTGTGGACAGGACGATCTCGTC
AAAGACGGGGGTGCTGCCCCCCACCAGGCCTGTGTTGCCGCCCTGTGGGTTCACCGCCAG
GTTCCTCTCGTGACAGTACCTGAGGATTTGAGCCACCTCCTGGGATGTCCGGGGCCGGAG
GAGCACCTTGCTGGAGCCTCGGACCGTCCTCAGCCAGTCTACGTTCGGAGCCTCCAGCTC
CTCTGGGTCTGTGATGACCCTGCCAGGGATGATGCGCTCCAGGGCGGCCAGGTCGTCCTC
AGACACCACGGAGAACGGCAGCCGCTGCATGGGGTAGCGGTCCCGAGTTAGCCTCACCCC
AGGAGCACTGGAGGAAGCAGAGGAACTGCCTCTTCGGACCAGGGGGCTGGTGCCCAGGGC
CCCCGCGGGGCCGCCCAGCCCAGAGATCCTGGTGGCCCCTGCCCACATCCTCTGCTGCAC
GAAGGCTCTCCGAGTGCAGGCTGCCCGCCACCAGAAGAGCCACGCAGGCCACCTGGGCAC
CAGAAGGGGCATGATGGTGCTTGTCCTGAAGGCAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47938132|gb|AAH71598.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47938132|gb|AAH71598.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               597-807, - strand, RNAz p=0.916253

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               597-807, - strand, RNAz p=0.916253

Aligned organism(s): 28 entry(ies)

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Aligned organism(s): 28 entry(ies)

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               38-242, gnl|bosTau2|chr14 (8186975-8186770)
               

               
               38-242, gnl|canFam2|chr25 (54499404-54499619)
               

               
               38-242, gnl|canFam2|chr25 (54499404-54499619)
               

               
               38-242, gnl|danRer3|chrNA (166778730-166778526)
               

               
               38-242, gnl|danRer3|chrNA (166778730-166778526)
               

               
               38-242, gnl|fr1|chrUn (249570506-249570301)
               

               
               38-242, gnl|fr1|chrUn (249570506-249570301)
               

               
               38-242, gnl|galGal2|chr9 (8841751-8841957)
               

               
               38-242, gnl|galGal2|chr9 (8841751-8841957)
               

               
               38-242, gnl|hg17|chr2 (242403023-242403238)
               

               
               38-242, gnl|Hg17|chr2 (242403229-242403024)
               

               
               38-242, gnl|hg17|chr2_random (392764-392979)
               

               
               38-242, gnl|monDom2|scaffold_162 (1435910-1435695)
               

               
               38-242, gnl|monDom2|scaffold_162 (1435910-1435695)
               

               
               38-242, gnl|oryCun1|scaffold_144855 (5460-5245)
               

               
               38-242, gnl|oryCun1|scaffold_144855 (5460-5245)
               

               
               38-242, gnl|panTro1|chr13 (133884576-133884791)
               

               
               38-242, gnl|panTro1|chr13 (133884576-133884791)
               

               
               38-242, gnl|rheMac2|chr12 (105665107-105665322)
               

               
               38-242, gnl|rheMac2|chr12 (105665107-105665322)
               

               
               38-242, gnl|rn3|chr9 (93311838-93312052)
               

               
               38-242, gnl|rn3|chr9 (93311838-93312052)
               

               
               38-242, gnl|tetNig1|chr10 (8495058-8494852)
               

               
               38-242, gnl|tetNig1|chr10 (8495058-8494852)
               

               
               38-242, gnl|xenTro1|scaffold_209 (1561004-1561207)
               

               
               38-242, gnl|xenTro1|scaffold_209 (1561004-1561207)
               


               
               437-807, gnl|bosTau2|chr14 (8179855-8179485)
               

               
               437-807, gnl|Mm7|chr1 (93734450-93734104)

Aligned organism(s): 28 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-242, gnl|bosTau2|chr14 (8186975-8186770)
               

               
               38-242, gnl|canFam2|chr25 (54499404-54499619)
               

               
               38-242, gnl|canFam2|chr25 (54499404-54499619)
               

               
               38-242, gnl|danRer3|chrNA (166778730-166778526)
               

               
               38-242, gnl|danRer3|chrNA (166778730-166778526)
               

               
               38-242, gnl|fr1|chrUn (249570506-249570301)
               

               
               38-242, gnl|fr1|chrUn (249570506-249570301)
               

               
               38-242, gnl|galGal2|chr9 (8841751-8841957)
               

               
               38-242, gnl|galGal2|chr9 (8841751-8841957)
               

               
               38-242, gnl|hg17|chr2 (242403023-242403238)
               

               
               38-242, gnl|Hg17|chr2 (242403229-242403024)
               

               
               38-242, gnl|hg17|chr2_random (392764-392979)
               

               
               38-242, gnl|monDom2|scaffold_162 (1435910-1435695)
               

               
               38-242, gnl|monDom2|scaffold_162 (1435910-1435695)
               

               
               38-242, gnl|oryCun1|scaffold_144855 (5460-5245)
               

               
               38-242, gnl|oryCun1|scaffold_144855 (5460-5245)
               

               
               38-242, gnl|panTro1|chr13 (133884576-133884791)
               

               
               38-242, gnl|panTro1|chr13 (133884576-133884791)
               

               
               38-242, gnl|rheMac2|chr12 (105665107-105665322)
               

               
               38-242, gnl|rheMac2|chr12 (105665107-105665322)
               

               
               38-242, gnl|rn3|chr9 (93311838-93312052)
               

               
               38-242, gnl|rn3|chr9 (93311838-93312052)
               

               
               38-242, gnl|tetNig1|chr10 (8495058-8494852)
               

               
               38-242, gnl|tetNig1|chr10 (8495058-8494852)
               

               
               38-242, gnl|xenTro1|scaffold_209 (1561004-1561207)
               

               
               38-242, gnl|xenTro1|scaffold_209 (1561004-1561207)
               


               
               437-807, gnl|bosTau2|chr14 (8179855-8179485)
               

               
               437-807, gnl|Mm7|chr1 (93734450-93734104)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	38-242, gnl\|bosTau2\|chr14 (8186975-8186770)
	38-242, gnl\|canFam2\|chr25 (54499404-54499619)
	38-242, gnl\|canFam2\|chr25 (54499404-54499619)
	38-242, gnl\|danRer3\|chrNA (166778730-166778526)
	38-242, gnl\|danRer3\|chrNA (166778730-166778526)
	38-242, gnl\|fr1\|chrUn (249570506-249570301)
	38-242, gnl\|fr1\|chrUn (249570506-249570301)
	38-242, gnl\|galGal2\|chr9 (8841751-8841957)
	38-242, gnl\|galGal2\|chr9 (8841751-8841957)
	38-242, gnl\|hg17\|chr2 (242403023-242403238)
	38-242, gnl\|Hg17\|chr2 (242403229-242403024)
	38-242, gnl\|hg17\|chr2_random (392764-392979)
	38-242, gnl\|monDom2\|scaffold_162 (1435910-1435695)
	38-242, gnl\|monDom2\|scaffold_162 (1435910-1435695)
	38-242, gnl\|oryCun1\|scaffold_144855 (5460-5245)
	38-242, gnl\|oryCun1\|scaffold_144855 (5460-5245)
	38-242, gnl\|panTro1\|chr13 (133884576-133884791)
	38-242, gnl\|panTro1\|chr13 (133884576-133884791)
	38-242, gnl\|rheMac2\|chr12 (105665107-105665322)
	38-242, gnl\|rheMac2\|chr12 (105665107-105665322)
	38-242, gnl\|rn3\|chr9 (93311838-93312052)
	38-242, gnl\|rn3\|chr9 (93311838-93312052)
	38-242, gnl\|tetNig1\|chr10 (8495058-8494852)
	38-242, gnl\|tetNig1\|chr10 (8495058-8494852)
	38-242, gnl\|xenTro1\|scaffold_209 (1561004-1561207)
	38-242, gnl\|xenTro1\|scaffold_209 (1561004-1561207)

	437-807, gnl\|bosTau2\|chr14 (8179855-8179485)
	437-807, gnl\|Mm7\|chr1 (93734450-93734104)