Non-Coding RNA Search

Ss1.1-Pig1-62N11.5

Sequence:


               
               ATAAGTATGTGAAAATGTTTATTTTTAAAGTTAACTAAATGCAATTTGTCTAACTGCCAC
ATGCACTGTTCTAAGAAAGAGCCTAATTTACCATCTGTAACTGAATTTTGGTTATTTCTC
CTTTTCATACTTGCTTGATGTGAAGTTATGGAAATATTAAGACTTGTGTTAAGGCAGAGT
CTCTCCTGTTACACAACACTGAACCTCATGCCACTGCCTCCGTGGTTATTGTCGAGCCCC
AGAGGCCAGACATGGAACATCATTCTCAGTGGCAGCTACAGGTACAGGAGGCTTAACCTC
TCCCTGGTTTGGGTTGAGAAATGACCTCGGAAAAGGAATCTTTTAAAATCTCCAGAATGA
TGATGGTTAGTGAGTAAATGTTAGATTTTGCATCCCGCAAACATCTGCCACCTTGTTCGT
GCTGTCCAGAGGAGTCATAAAGGTAAAGCCTTTAAAGATCTGAAGTTCAGAGAGTGTCCT
AGAGTAAGACCCACTCCCTCGGCGTGGTTGTGTCAGCGTGGGGATCACTGGAGCCCCGTG
CTGGCCGCGGTCTTTCCTGGTTTCCTTGAGAGGGTGGTCGTCAGCTGGTATTGACTACTG
CTCTCCACTTGCTCCAGAACATTGTTTAAATCCACACACAAAAAAAGAGATTACCCCTGT
TGAATAGTTTTCTTTGGCCCAGAGGAATGGCCTGGGGAACACATCTTGGTATATGTTCTC
CCCTCTAAGTCTTTGTGGATTTTTTTGTTTGTTGTTGTTGTTGTTTTGCAAAATAAGTTT
TTGGCAGTTAAAAAACTTCATATAGGTCACTTTATAGGAACCAAGTGATGGATGTTAAGA
GACTTTATAATTTTTCTCAGGGACCTAAAACCTGAATTTGGATAAAATTAAATAAATATT
TTTTTTTCAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAGTATGTGAAAATGTTTATTTTTAAAGTTAACTAAATGCAATTTGTCTAACTGCCAC
ATGCACTGTTCTAAGAAAGAGCCTAATTTACCATCTGTAACTGAATTTTGGTTATTTCTC
CTTTTCATACTTGCTTGATGTGAAGTTATGGAAATATTAAGACTTGTGTTAAGGCAGAGT
CTCTCCTGTTACACAACACTGAACCTCATGCCACTGCCTCCGTGGTTATTGTCGAGCCCC
AGAGGCCAGACATGGAACATCATTCTCAGTGGCAGCTACAGGTACAGGAGGCTTAACCTC
TCCCTGGTTTGGGTTGAGAAATGACCTCGGAAAAGGAATCTTTTAAAATCTCCAGAATGA
TGATGGTTAGTGAGTAAATGTTAGATTTTGCATCCCGCAAACATCTGCCACCTTGTTCGT
GCTGTCCAGAGGAGTCATAAAGGTAAAGCCTTTAAAGATCTGAAGTTCAGAGAGTGTCCT
AGAGTAAGACCCACTCCCTCGGCGTGGTTGTGTCAGCGTGGGGATCACTGGAGCCCCGTG
CTGGCCGCGGTCTTTCCTGGTTTCCTTGAGAGGGTGGTCGTCAGCTGGTATTGACTACTG
CTCTCCACTTGCTCCAGAACATTGTTTAAATCCACACACAAAAAAAGAGATTACCCCTGT
TGAATAGTTTTCTTTGGCCCAGAGGAATGGCCTGGGGAACACATCTTGGTATATGTTCTC
CCCTCTAAGTCTTTGTGGATTTTTTTGTTTGTTGTTGTTGTTGTTTTGCAAAATAAGTTT
TTGGCAGTTAAAAAACTTCATATAGGTCACTTTATAGGAACCAAGTGATGGATGTTAAGA
GACTTTATAATTTTTCTCAGGGACCTAAAACCTGAATTTGGATAAAATTAAATAAATATT
TTTTTTTCAGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               631-788, - strand, RNAz p=0.99918

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               631-788, - strand, RNAz p=0.99918

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               652-739, 536440 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM483197.1|), 
blast E-value=3e-24, identity=92.05% 
               

               
               647-739, KYE602702176.R1 CSEQFXL23 stomach-abomasum Bos taurus cDNA, mRNA 
(gb|CB169484.1|), blast E-value=6.02558e-44, identity=100% 
               

               
               652-739, 694322 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB443424.1|), 
blast E-value=3e-24, identity=92.05% 
               

               
               652-739, BE04005X1D02 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN436024.1|), blast E-value=3e-24, identity=92.05% 
               

               
               652-739, 1234484 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN284757.1|), 
blast E-value=3e-24, identity=92.05% 
               

               
               652-739, UMC-bend_0B02-031-h02 Day 16 Uterus from a non-pregnant animal bend 
(gb|DN641096.1|), blast E-value=8e-22, identity=90.91%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               652-739, 536440 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM483197.1|), 
blast E-value=3e-24, identity=92.05% 
               

               
               647-739, KYE602702176.R1 CSEQFXL23 stomach-abomasum Bos taurus cDNA, mRNA 
(gb|CB169484.1|), blast E-value=6.02558e-44, identity=100% 
               

               
               652-739, 694322 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB443424.1|), 
blast E-value=3e-24, identity=92.05% 
               

               
               652-739, BE04005X1D02 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN436024.1|), blast E-value=3e-24, identity=92.05% 
               

               
               652-739, 1234484 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN284757.1|), 
blast E-value=3e-24, identity=92.05% 
               

               
               652-739, UMC-bend_0B02-031-h02 Day 16 Uterus from a non-pregnant animal bend 
(gb|DN641096.1|), blast E-value=8e-22, identity=90.91%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-912, gnl|bosTau2|chr10 (11695170-11694238)
               

               
               1-912, gnl|Hg17|chr15 (69904491-69903582)
               

               
               1-912, gnl|Mm7|chr9 (59953279-59954122)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr10 (11695170-11694238)
               

               
               1-912, gnl|Hg17|chr15 (69904491-69903582)
               

               
               1-912, gnl|Mm7|chr9 (59953279-59954122)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	652-739, 536440 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM483197.1\|), blast E-value=3e-24, identity=92.05%
	647-739, KYE602702176.R1 CSEQFXL23 stomach-abomasum Bos taurus cDNA, mRNA (gb\|CB169484.1\|), blast E-value=6.02558e-44, identity=100%
	652-739, 694322 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB443424.1\|), blast E-value=3e-24, identity=92.05%
	652-739, BE04005X1D02 BE04 Normalized and Subtracted bovine embryonic and (gb\|CN436024.1\|), blast E-value=3e-24, identity=92.05%
	652-739, 1234484 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN284757.1\|), blast E-value=3e-24, identity=92.05%
	652-739, UMC-bend_0B02-031-h02 Day 16 Uterus from a non-pregnant animal bend (gb\|DN641096.1\|), blast E-value=8e-22, identity=90.91%

	1-912, gnl\|bosTau2\|chr10 (11695170-11694238)
	1-912, gnl\|Hg17\|chr15 (69904491-69903582)
	1-912, gnl\|Mm7\|chr9 (59953279-59954122)

	fat (0.147427)
	ski (0.146735)
	csk (0.140746)
	sug (0.127291)
	bla (0.124347)
	pgl (0.118483)